miRBase entry: ath-MIR395c

Stem-loop ath-MIR395c

Arabidopsis thaliana ath-MIR395c precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
25 open access papers mention ath-MIR395c
(107 sentences)



   u ca  u          u         u     a    uca      c 
aug c  ca gaguucccuu aacgcuuca uguug auac   aagcca  
||| |  || |||||||||| ||||||||| ||||| ||||   |||||| a
uac g  gu CUCAGGGGGG UUGUGAAGU acaau uaug   uuuggu  
   u ug  u          U         C     a    ---      u 

Annotation confidence Not enough data
Do you think this miRNA is real?
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].

Genome context
chr1: 9367080-9367179 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR395c
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ath-miR395c

Accession MIMAT0000940
Description Arabidopsis thaliana ath-miR395c mature miRNA
Evidence experimental
5'RACE [1-2], Northern [1], PCR [1], MPSS [3], 454 [4], Illumina [5]


  1. PubMed ID: 16040653
    Expression of Arabidopsis MIRNA genes
    "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
    "Plant Physiol (2005) 138:2145-2154

  2. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  3. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  4. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  5. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799