Stem-loop ath-MIR774a

Accession

MI0005104

Description

Arabidopsis thaliana ath-MIR774a precursor miRNA

Literature search

2 open access papers mention ath-MIR774a
(9 sentences)

Sequence

ucauuucagauggcuguuuggguaacuaauauuuaagauuuuggucaauuuaaguuaccaauuuauauaUUGGUUACCCAUAUGGCCAUCucaaauuu
..((((.((((((((((.((((((((((((((.((((...(((((.(((....)))))))))))).)))))))))))))).)))))))))).))))..

Structure

uc    c          u              u    auu     c   u 
  auuu agauggcugu uggguaacuaauau uaag   uuggu aau u
  |||| |||||||||| |||||||||||||| ||||   ||||| |||  
  uaaa uCUACCGGUA ACCCAUUGGUUaua auuu   aacca uug a
uu    c          U              u    ---     -   a 

Annotation confidence Not enough data

Genome context

chr1: 22149936-22150033 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR774a

Mature ath-miR774a

• Accession: MIMAT0003933
• Description: Arabidopsis thaliana ath-miR774a mature miRNA
• Sequence: 70 - UUGGUUACCCAUAUGGCCAUC - 90
• Evidence: experimental ; MPSS [1], Northern [1], 454 [2]

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219