Comments or questions? Email
mirbase@manchester.ac.uk
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes |
|
|---|---|
| PubMed ID | 17299599 |
| Authors | Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC |
| Journal | PLoS One |
| Volume | 2 |
| Pages | e219 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| ath-MIR771 | MI0005101 | None | chr3 | 19659301 | 19659413 | - | - |
| ath-MIR472 | MI0005102 | None | chr1 | 4182132 | 4182299 | - | - |
| ath-MIR773a | MI0005103 | None | chr1 | 13067251 | 13067335 | + | - |
| ath-MIR774a | MI0005104 | None | chr1 | 22149936 | 22150033 | + | - |
| ath-MIR775 | MI0005105 | None | chr1 | 29422452 | 29422574 | + | - |
| ath-MIR776 | MI0005106 | None | chr1 | 22795618 | 22795735 | + | - |
| ath-MIR777 | MI0005107 | None | chr1 | 26638000 | 26638107 | + | - |
| ath-MIR778 | MI0005108 | None | chr2 | 17349437 | 17349574 | - | - |
| ath-MIR779 | MI0005109 | None | chr2 | 9560761 | 9560923 | + | - |
| ath-MIR780 | MI0005110 | None | chr4 | 8504141 | 8504314 | - | - |
| ath-MIR781a | MI0005111 | None | chr1 | 7423518 | 7423611 | + | - |
| ath-MIR823 | MI0005380 | None | chr3 | 4496775 | 4496965 | - | - |
| ath-MIR825 | MI0005381 | None | chr2 | 11159660 | 11159845 | + | - |
| ath-MIR827 | MI0005383 | None | chr3 | 22122760 | 22122936 | - | - |
| ath-MIR829 | MI0005385 | None | chr1 | 11834022 | 11834226 | - | - |
| ath-MIR830 | MI0005386 | None | chr1 | 4820355 | 4820549 | - | - |
| ath-MIR833a | MI0005389 | None | chr1 | 29525151 | 29525337 | + | - |
| ath-MIR840 | MI0005396 | None | chr2 | 771337 | 771562 | - | - |
| ath-MIR842 | MI0005398 | None | chr1 | 22577067 | 22577265 | + | - |
| ath-MIR843 | MI0005399 | None | chr3 | 17742098 | 17742302 | + | - |
| ath-MIR844 | MI0005400 | None | chr2 | 9942151 | 9942335 | - | - |
| ath-MIR845a | MI0005401 | None | chr4 | 12217406 | 12217568 | - | - |
| ath-MIR846 | MI0005402 | None | chr1 | 22577375 | 22577733 | + | - |
| ath-MIR851 | MI0005406 | None | chr3 | 19659532 | 19659715 | - | - |
| ath-MIR852 | MI0005407 | None | chr4 | 8336166 | 8336373 | + | - |
| ath-MIR853 | MI0005408 | None | chr3 | 8346367 | 8346656 | + | - |
| ath-MIR824 | MI0005409 | None | chr4 | 12625094 | 12625782 | + | - |
| ath-MIR856 | MI0005433 | None | chr1 | 11957460 | 11957730 | + | - |
| ath-MIR857 | MI0005434 | None | chr4 | 7878185 | 7878561 | - | - |
| ath-MIR858a | MI0005435 | None | chr1 | 26773539 | 26773725 | - | - |
| ath-MIR859 | MI0005436 | None | chr1 | 22149718 | 22149843 | + | - |
| ath-MIR860 | MI0005437 | None | chr5 | 9098791 | 9098916 | + | - |
| ath-MIR861 | MI0005438 | None | chr3 | 17838135 | 17838266 | - | - |
| ath-MIR862 | MI0005439 | None | chr2 | 10718096 | 10718198 | + | - |
| ath-MIR863 | MI0005440 | None | chr4 | 7846597 | 7846899 | + | - |
| ath-MIR864 | MI0005441 | None | chr1 | 6740500 | 6740591 | + | - |
| ath-MIR865 | MI0005442 | None | chr5 | 5169990 | 5170131 | + | - |
| ath-MIR866 | MI0005443 | None | chr5 | 16157823 | 16157948 | - | - |
| ath-MIR845b | MI0005444 | None | chr4 | 12214069 | 12214167 | - | - |
| ath-MIR867 | MI0005445 | None | chr4 | 11375364 | 11375481 | + | - |
| ath-MIR868 | MI0005446 | None | chr3 | 6488234 | 6488426 | + | - |
| ath-MIR869 | MI0005447 | None | chr5 | 15891579 | 15891873 | - | - |
| ath-MIR870 | MI0005448 | None | chr5 | 21395545 | 21395629 | - | - |
| ath-MIR156d | MI0000181 | None | chr5 | 3456632 | 3456749 | - | - |
| ath-MIR158a | MI0000188 | None | chr3 | 3366331 | 3366430 | - | - |
| ath-MIR159a | MI0000189 | None | chr1 | 27713233 | 27713416 | - | - |
| ath-MIR160a | MI0000190 | None | chr2 | 16340279 | 16340363 | + | - |
| ath-MIR160b | MI0000191 | None | chr4 | 9888982 | 9889070 | + | - |
| ath-MIR160c | MI0000192 | None | chr5 | 19009094 | 19009182 | - | - |
| ath-MIR161 | MI0000193 | None | chr1 | 17825685 | 17825857 | + | - |
| ath-MIR163 | MI0000196 | None | chr1 | 24884066 | 24884396 | + | - |
| ath-MIR164b | MI0000198 | None | chr5 | 287584 | 287736 | + | - |
| ath-MIR167a | MI0000208 | None | chr3 | 8108072 | 8108209 | + | - |
| ath-MIR167b | MI0000209 | None | chr3 | 23406168 | 23406276 | + | - |
| ath-MIR173 | MI0000217 | None | chr3 | 8236153 | 8236254 | + | - |
| ath-MIR159b | MI0000218 | None | chr1 | 6220646 | 6220841 | + | - |
| ath-MIR319a | MI0000544 | None | chr4 | 12352956 | 12353131 | + | - |
| ath-MIR319b | MI0000545 | None | chr5 | 16660469 | 16660640 | - | - |
| ath-MIR167d | MI0000975 | None | chr1 | 11137539 | 11137915 | + | - |
| ath-MIR393a | MI0001003 | None | chr2 | 16652101 | 16652233 | + | - |
| ath-MIR393b | MI0001004 | None | chr3 | 20691647 | 20691806 | + | - |
| ath-MIR395a | MI0001007 | None | chr1 | 9363196 | 9363288 | - | - |
| ath-MIR395b | MI0001008 | None | chr1 | 9364471 | 9364570 | + | - |
| ath-MIR395c | MI0001009 | None | chr1 | 9367080 | 9367179 | + | - |
| ath-MIR395d | MI0001010 | None | chr1 | 26269979 | 26270078 | - | - |
| ath-MIR395e | MI0001011 | None | chr1 | 26272776 | 26272870 | - | - |
| ath-MIR395f | MI0001012 | None | chr1 | 26273858 | 26273969 | + | - |
| ath-MIR398a | MI0001017 | None | chr2 | 1040938 | 1041042 | + | - |
| ath-MIR399a | MI0001020 | None | chr1 | 10227073 | 10227195 | + | - |
| ath-MIR399d | MI0001023 | None | chr2 | 14442978 | 14443077 | - | - |
| ath-MIR399e | MI0001024 | None | chr2 | 14443504 | 14443612 | + | - |
| ath-MIR399f | MI0001025 | None | chr2 | 14444997 | 14445114 | + | - |
| ath-MIR400 | MI0001069 | None | chr1 | 11785936 | 11786037 | + | - |
| ath-MIR158b | MI0001084 | None | chr1 | 20772218 | 20772302 | + | - |
| ath-MIR159c | MI0001085 | None | chr2 | 18994632 | 18994856 | + | - |
| ath-MIR319c | MI0001086 | None | chr2 | 17029701 | 17029899 | + | - |
| ath-MIR167c | MI0001088 | None | chr3 | 1306622 | 1306781 | - | - |
| ath-MIR447a | MI0002407 | None | chr4 | 1528134 | 1528370 | - | - |
| ath-MIR447b | MI0002408 | None | chr4 | 1535426 | 1535661 | - | - |
| ath-MIR447c | MI0002409 | None | chr4 | 1523306 | 1523503 | - | - |
| ath-MIR822 | MI0005379 | None | chr5 | 897020 | 897356 | - | - |
| ath-MIR774b | MI0014668 | None | chr1 | 22150128 | 22150266 | + | - |
| ath-MIR858b | MI0019228 | None | chr1 | 26772633 | 26772935 | + | - |
| ath-MIR833b | MI0019230 | None | chr1 | 29525202 | 29525286 | - | - |
| ath-MIR781b | MI0019231 | None | chr1 | 7423521 | 7423607 | - | - |