Stem-loop ath-MIR781b

Accession

MI0019231

Description

Arabidopsis thaliana ath-MIR781b precursor miRNA

Literature search

2 open access papers mention ath-MIR781b
(2 sentences)

Sequence

65323 reads, 196.0 reads per million, 183 experiments

auUUAGAGUUUUCUGGAUACUUAaaaguuaauaucgaagaagcccucucuuuguuaguaacuaauaAGUAUCCAGAAAACUCUAAuu
..(((((((((((((((((((((..(((((.((.((((((.......)))))).)).)))))..)))))))))))))))))))))..

Structure

au                     aa     a  u      ag 
  UUAGAGUUUUCUGGAUACUUA  aguua ua cgaaga  c
  |||||||||||||||||||||  ||||| || ||||||  c
  AAUCUCAAAAGACCUAUGAau  ucaau au guuucu  c
uu                     aa     g  u      cu 

Annotation confidence High

Genome context

chr1: 7423521-7423607 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR781b

Mature ath-miR781b-5p

• Accession: MIMAT0022420
• Description: Arabidopsis thaliana ath-miR781b-5p mature miRNA
• Sequence: 3 - UUAGAGUUUUCUGGAUACUUA - 23
• Evidence: experimental ; Illumina [1]

Mature ath-miR781b-3p

• Accession: MIMAT0053947
• Description: Arabidopsis thaliana ath-miR781b-3p mature miRNA
• Sequence: 67 - AGUAUCCAGAAAACUCUAA - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176