Stem-loop ath-MIR863

Accession

MI0005440

Description

Arabidopsis thaliana ath-MIR863 precursor miRNA

Literature search

2 open access papers mention ath-MIR863
(3 sentences)

Sequence

232495 reads, 1696.0 reads per million, 182 experiments

cucauaagauguagaaacuagagaagaguuugggggaaaacucuuucuuaugucUUGUUGAUCUCAAUAGCAUUGAuacaauguauauauaugcaauuuagaauauguuuuuccuaauuugaauaagaaauagauaaacaugaauaaguauauauauauuuccuauuuagaauauuuauuuauucaaauuaggugaaacauaaucuagguuguauauauauauguuauaccaAUGCGAUUGAGAGCAACAAGACauaauaaagaguuuucgaaaacuuuuuucuaguuucuacauaagaggag
(((.....(((((((((((((((((((((((....(((((((((((.(((((((((((((.(((((((.((((((.((.(((((((((((((((((((((((.((((((((.((((((((((((((...(((((((....(((((((((((....)))))...))))))...))))))))))))))))))))).)))))))).))))))))))))))))))))))).)).)))))).))))))).))))))))))))).)))))))))))..))))))))))))))))))))))).....)))

Structure

   auaag                       gggg           c             A       A      A  c                       a        u              gaa       aaca      ---     a 
cuc     auguagaaacuagagaagaguuu    gaaaacucuuu uuaugucUUGUUG UCUCAAU GCAUUG ua aauguauauauaugcaauuuaga uauguuuu ccuaauuugaauaa   auagaua    ugaaua   aguau u
|||     |||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||   |||||||    ||||||   |||||  
gag     uacaucuuugaucuuuuuucaaa    cuuuugagaaa aauaCAGAACAAC AGAGUUA CGUAac au uuguauauauauauguuggaucu auacaaag ggauuaaacuuauu   uauuuau    auuuau   uuaua a
   gagaa                       --ag           u             G       G      c  a                       a        u              ---       -aag      ccu     u 

Annotation confidence High

Genome context

chr4: 7846597-7846899 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR863

Mature ath-miR863-5p

• Accession: MIMAT0004309
• Description: Arabidopsis thaliana ath-miR863-5p mature miRNA
• Sequence: 55 - UUGUUGAUCUCAAUAGCAUUGA - 76
• Evidence: experimental ; cloned [1]

Mature ath-miR863-3p

• Accession: MIMAT0004310
• Description: Arabidopsis thaliana ath-miR863-3p mature miRNA
• Sequence: 233 - AUGCGAUUGAGAGCAACAAGAC - 254
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219