Stem-loop ath-MIR843

Accession

MI0005399

Description

Arabidopsis thaliana ath-MIR843 precursor miRNA

Literature search

3 open access papers mention ath-MIR843
(5 sentences)

Sequence

207550 reads, 808.0 reads per million, 183 experiments

aaugcccaacaacuucgcguuauuucugaaaacuucauaucuauuuucuUUUAGGUCGAGCUUCAUUGGAAccaaaugguggcucauccaucuauuacuaaagcuauacagcagguggacaagccaucaucauguucCUGUGAAGCUCGAUCUAAAAGAcuacagauuugagauuuucaaaaauaacaugaaguacauucuccac
...........((((((.(((((((.((((((.((((.((((.(..((((((((((((((((((((.(((((...(((((((((..(((((((.........(((....))))))))))..)))))))))...))))).))))))))))))))))))))..).)))).)))).)))))).))))))).))))))...........

Structure

aaugcccaaca      c       c      c    u    a uu                    U     caa         ca       auuacuaaa   a 
           acuucg guuauuu ugaaaa uuca aucu u  ucuUUUAGGUCGAGCUUCAU GGAAc   augguggcu  uccaucu         gcu u
           |||||| ||||||| |||||| |||| |||| |  |||||||||||||||||||| |||||   |||||||||  |||||||         |||  
           ugaagu caauaaa acuuuu gagu uaga a  AGAAAAUCUAGCUCGAAGUG Ccuug   uacuaccga  aggugga         cga a
caccucuuaca      a       a      a    u    c uc                    U     uac         ac       ---------   c 

Annotation confidence High

Genome context

chr3: 17742098-17742302 [+]

Mature ath-miR843-5p

• Accession: MIMAT0004265
• Description: Arabidopsis thaliana ath-miR843-5p mature miRNA
• Sequence: 50 - UUUAGGUCGAGCUUCAUUGGAA - 71
• Evidence: experimental ; 454 [1], cloned [2], Illumina [3]

Mature ath-miR843-3p

• Accession: MIMAT0053870
• Description: Arabidopsis thaliana ath-miR843-3p mature miRNA
• Sequence: 138 - CUGUGAAGCUCGAUCUAAAAGA - 159
• Evidence: experimental ; unknown

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219