Stem-loop ath-MIR864

Accession

MI0005441

Description

Arabidopsis thaliana ath-MIR864 precursor miRNA

Literature search

2 open access papers mention ath-MIR864
(2 sentences)

Sequence

4602 reads, 27.0 reads per million, 158 experiments

gcuUCAGGUAUGAUUGACUUCAAAaaauaccuugaaacuauaaaccucaguuucuuugaauuugauuuUUAAAGUCAAUAAUACCUUGAAgc
(((((((((((.((((((((.(((((.......((((((.........))))))...........))))).)))))))).))))).))))))

Structure

      -     G        C     ----auaccuu      aua 
gcuUCA GGUAU AUUGACUU AAAaa           gaaacu   a
|||||| ||||| |||||||| |||||           ||||||   a
cgAAGU CCAUA UAACUGAA UUuuu           cuuuga   c
      U     A        A     aguuuaaguuu      cuc 

Annotation confidence High

Genome context

chr1: 6740500-6740591 [+]

Mature ath-miR864-5p

• Accession: MIMAT0004311
• Description: Arabidopsis thaliana ath-miR864-5p mature miRNA
• Sequence: 4 - UCAGGUAUGAUUGACUUCAAA - 24
• Evidence: experimental ; cloned [1]

Mature ath-miR864-3p

• Accession: MIMAT0004312
• Description: Arabidopsis thaliana ath-miR864-3p mature miRNA
• Sequence: 69 - UUAAAGUCAAUAAUACCUUGAA - 90
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219