Stem-loop ath-MIR163

Accession

MI0000196

Description

Arabidopsis thaliana ath-MIR163 precursor miRNA

Literature search

18 open access papers mention ath-MIR163
(170 sentences)

Sequence

2761103 reads, 8876.0 reads per million, 185 experiments

acccgguggauaaaauCGAGUUCCAACCUCUUCAACGAcaacgauuucaacacucucuuccaggaacaacuuccuccaggcagaugauacuaaagugcuggaguucccgguuccugagagugaguccauaucaaaaugcgcauucguuaucacuugguugaacccauuuggggauuuaaauuuggaggugaaauggaacgcguaauugaugacuccuacguggaaccucuucuuaggaagagcacggucgaagaaguaacugcgcagugcuuaaaucguagaugcuaaagucgUUGAAGAGGACUUGGAACUUCGAUAuuaucccccgugu
((.(((.((((((.(((((((((((((((((((((((((............((((((....((((((......((((((.((..(.......)..))))))))......))))))))))))(((((...(((((..(((((.((((((.((((((..((((((((.....))).)))))......))))))))))))..))))).))))))))))...((((....((((((....))))))))))........((((.(((((..((......))))))).))))...)))))))))))))..))))))).))))).)))))).))).))

Structure

  c   u      a     -       --             aacgauuucaacacucucuuccaggaacaacuuccuccaggcagaugauacuaaagugcuggaguucccgguuccugagagu     cau     aa     -a      a      ----gg     -   a 
ac cgg ggauaa auCGA GUUCCAA  CCUCUUCAACGAc                                                                                  gaguc   aucaa  ugcgc  uucguu ucacuu      uugaa ccc u
|| ||| |||||| ||||| |||||||  |||||||||||||                                                                                  |||||   |||||  |||||  |||||| ||||||      ||||| ||| u
ug gcc ccuauu UAGCU CAAGGUU  GGAGAAGUUgcug                                                                                  cucag   uaguu  augcg  agguaa agugga      aauuu ggg u
  u   c      A     U       CA             --------aaaucguagaugcuaaauucgugacgcgucaaugaagaagcuggcacgagaaggauucuucuccaaggugcauc     ---     -a     ca      -      gguuua     a   g 

Annotation confidence High

Genome context

chr1: 24884066-24884396 [+]

Mature ath-miR163-5p

• Accession: MIMAT0053796
• Description: Arabidopsis thaliana ath-miR163-5p mature miRNA
• Sequence: 17 - CGAGUUCCAACCUCUUCAACGA - 38
• Evidence: experimental ; unknown

Mature ath-miR163-3p

• Accession: MIMAT0000184
• Description: Arabidopsis thaliana ath-miR163-3p mature miRNA
• Sequence: 294 - UUGAAGAGGACUUGGAACUUCGAUA - 318
• Evidence: experimental ; cloned [1-2], Northern [1], 5'RACE [2], 454 [3-4], MPSS [3], Illumina [5]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


3. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


4. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


5. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177