Stem-loop ath-MIR447a

Accession

MI0002407

Description

Arabidopsis thaliana ath-MIR447a precursor miRNA MIR447

Gene
family

RF04149; MIR447

Literature search

4 open access papers mention ath-MIR447a
(20 sentences)

Sequence

cauucuuaauauauaauacuacuuuuucauccauuaaaccccuuacaaugucgaguaaacgaagcaucuguccccugguauugucuucgagcuugguguuuuuuucuagccaacuccaaguucucgaguugaucauuguuuguauucuugagacauuauUUGGGGACGAGAUGUUUUGUUGacucgauauaagaaggggcuuUAUGGAAGAAAUUGUAGUAUUauauaucgagagug
(((((((.((((((((((((((..((((.(((((.((.((((((...(((((((((.((((((((((((((((((.((((.((((...((((((((.(((...........))).))))))))(((((.....((.....))....))))))))).)))).)))))).)))))))))))).)))))))))...)))))).)).))))).))))..)))))))))))))).)))))))

Structure

       a              uu    a     u  a      aca         a            -      u    u    -------------------------uuc        u   uuuu 
cauucuu auauauaauacuac  uuuc uccau aa ccccuu   augucgagu aacgaagcaucu gucccc ggua uguc                            gagcuugg guu    u
||||||| ||||||||||||||  |||| ||||| || ||||||   ||||||||| |||||||||||| |||||| |||| ||||                            |||||||| |||    c
gugagag uauauaUUAUGAUG  AAAG AGGUA uu ggggaa   uauagcuca UUGUUUUGUAGA CAGGGG Uuau acag                            cuugaacc caa    u
       c              UU    A     U  c      gaa         G            G      U    u    aguucuuauguuuguuacuaguugagcu        u   ccga 

Annotation confidence Not enough data

Genome context

chr4: 1528134-1528370 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR447a

Mature ath-miR447a-3p

• Accession: MIMAT0002113
• Description: Arabidopsis thaliana ath-miR447a-3p mature miRNA
• Sequence: 160 - UUGGGGACGAGAUGUUUUGUUG - 181
• Evidence: experimental ; cloned [1-2], 5'RACE [2], 454 [3], Illumina [4]

Mature ath-miR447a.2-3p

• Accession: MIMAT0020345
• Description: Arabidopsis thaliana ath-miR447a.2-3p mature miRNA
• Sequence: 203 - UAUGGAAGAAAUUGUAGUAUU - 223
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


2. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


3. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


4. PubMed ID: 15851028
   microRNA-directed phasing during trans-acting siRNA biogenesis in plants
   "Allen E, Xie Z, Gustafson AM, Carrington JC"
   "Cell (2005) 121:207-221


5. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620