Accession
MI0002407
Description
Arabidopsis thaliana
ath-MIR447a precursor miRNA MIR447
Gene
family?
family?
RF04149;
MIR447
Literature search
4 open access papers mention ath-MIR447a
(20 sentences)
(20 sentences)
Sequence
1025993
reads,
4186.0
reads per million, 185 experiments
cauucuuaauauauaaUACUACUUUUUCAUCCAUUAAAccccuuacaaugucgaguaaACGAAGCAUCUGUCCCCUGGUauugucuucgagcuugguguuuuuuucuagccaacuccaaguucucgaguugaucauuguuuguauucuugagacauuauUUGGGGACGAGAUGUUUUGUUGAcucgauauaagaaggggcuuUAUGGAAGAAAUUGUAGUAUUAuauaucgagagug
(((((((.((((((((((((((..((((.(((((.((.((((((...(((((((((.((((((((((((((((((.((((.((((...((((((((.(((...........))).))))))))(((((.....((.....))....))))))))).)))).)))))).)))))))))))).)))))))))...)))))).)).))))).))))..)))))))))))))).)))))))
(((((((.((((((((((((((..((((.(((((.((.((((((...(((((((((.((((((((((((((((((.((((.((((...((((((((.(((...........))).))))))))(((((.....((.....))....))))))))).)))).)))))).)))))))))))).)))))))))...)))))).)).))))).))))..)))))))))))))).)))))))
Structure
a UU A U A aca a - U u -------------------------uuc u uuuu
cauucuu auauauaaUACUAC UUUC UCCAU AA ccccuu augucgagu aACGAAGCAUCU GUCCCC GGUa uguc gagcuugg guu u
||||||| |||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||| |||||| |||| |||| |||||||| ||| c
gugagag uauauAUUAUGAUG AAAG AGGUA uu ggggaa uauagcucA UUGUUUUGUAGA CAGGGG Uuau acag cuugaacc caa u
c UU A U c gaa G G U u aguucuuauguuuguuacuaguugagcu u ccga
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr4: 1528134-1528370 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR447a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR447a-5p
| Accession | MIMAT0060815 |
| Description | Arabidopsis thaliana ath-miR447a-5p mature miRNA |
| Sequence | 17 - UACUACUUUUUCAUCCAUUAAA - 38 |
| Evidence |
experimental
Illumina [1] |
Mature ath-miR447a-5p.2
| Accession | MIMAT0060827 |
| Description | Arabidopsis thaliana ath-miR447a-5p.2 mature miRNA |
| Sequence | 59 - ACGAAGCAUCUGUCCCCUGGU - 79 |
| Evidence |
experimental
Illumina [1] |
Mature ath-miR447a-3p
| Accession | MIMAT0002113 |
| Description | Arabidopsis thaliana ath-miR447a-3p mature miRNA |
| Sequence | 203 - UAUGGAAGAAAUUGUAGUAUUA - 224 |
| Evidence |
experimental
cloned [1-2], 5'RACE [2], 454 [3], Illumina [4] |
Mature ath-miR447a-3p.2
| Accession | MIMAT0020345 |
| Description | Arabidopsis thaliana ath-miR447a-3p.2 mature miRNA |
| Sequence | 160 - UUGGGGACGAGAUGUUUUGUUGA - 182 |
| Evidence |
experimental
Illumina [5] |
References
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