Accession
MI0000209
Description
Arabidopsis thaliana
ath-MIR167b precursor miRNA
Literature search
43 open access papers mention ath-MIR167b
(198 sentences)
(198 sentences)
Sequence
2738536
reads,
8581.0
reads per million, 185 experiments
gggaacaagUGAAGCUGCCAGCAUGAUCUAucuuugguuaagagaugaauguggaaacauauugcuuaaacccaagcuaGGUCAUGCUCUGACAGCCUCACuccuuccu
(((((..(((((.(((((.(((((((((((.(((.((((..(((...((((((....)))))).))).)))).))).)))))))))))..).)))).)))))..)))))
(((((..(((((.(((((.(((((((((((.(((.((((..(((...((((((....)))))).))).)))).))).)))))))))))..).)))).)))))..)))))
Structure
ca A - -C u u aa aug g
gggaa agUGA GCUG C AGCAUGAUCUA cuu gguu gag aaugug a
||||| ||||| |||| | ||||||||||| ||| |||| ||| ||||||
uccuu uCACU CGAC G UCGUACUGGau gaa ccaa uuc uuauac a
cc C A UC c c -a --g a
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR167b is thought, like miR160, to target mRNAs coding for auxin response factors, DNA binding proteins that are thought to control transcription in response to the phytohormone auxin. Transcriptional regulation is important for many of the diverse developmental responses to auxin signals, which include cell elongation, division, and differentiation in both roots and shoots [2].
Genome context
chr3: 23406168-23406276 [+]
Database links
Mature ath-miR167b-5p
| Accession | MIMAT0000197 |
| Description | Arabidopsis thaliana ath-miR167b-5p mature miRNA |
| Sequence | 10 - UGAAGCUGCCAGCAUGAUCUA - 30 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR167b-3p
| Accession | MIMAT0053803 |
| Description | Arabidopsis thaliana ath-miR167b-3p mature miRNA |
| Sequence | 80 - GGUCAUGCUCUGACAGCCUCAC - 101 |
| Evidence |
experimental
unknown |
References
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