Accession
MI0005409
Description
Arabidopsis thaliana
ath-MIR824 precursor miRNA
Literature search
7 open access papers mention ath-MIR824
(25 sentences)
(25 sentences)
Sequence
uaucaccauuuguacuugaguugucucucaugucUAGACCAUUUGUGAGAAGGGAguuuuuguuuacaccaauaccccccagucucuaaauuuguaagaaguauuaugcucaauuaaggaacauagcuaguucgacauaccauacuacccuuuuuaaaacuauccuauauguuugaugcuagcauagcguaauuuuguguucucauggugcagcaggguuaguuuauuguguaccucuagauauauauucucuugcugcguaggguucccaagcugccaaaaacuuuuaaaaauuagugaucuguuccccaaacccccauucaauaagaaaggucuaccuguagcucacagucacagcuauuagagcuguccuugcuucuuuggguuuacuguuuuaguuaauuaguuacccuaugaaagucugauccuucagaaguuagguauagaaguaagucgauuaaguucauucaugacuuuuccagauguugcauacauaacuuuuuuuauuuguauucgaacuaguccaagccgauucucaaaaucauauaaaaucauuuacaccuuggucaugguagcuaagaauauuguaucuaaaauuggggaguggggagauguuugguuauauucCCUUCUCAUCGAUGGUCUAGAugugcgaggugacucucauggagguaaagaacaauggugau
.(((((((((.((.(((((((((((((.(((((((((((((((.(((((((((((((..........(((((((.((((((.(((((((.((((.....((((((..((((((((((((......((((((((((.((((..(((((...(((((((((...........(((((..(((.((.(((((......((((((((...((((((.(((..........)))))))))...))).)))))......))))).))..)))...)))))..........))))))))).))))).......................((((((((((((.....((((((((..((((((((((.....)))))).(((((((((..((((..((((.((.....)).)))).))))........(((((....)))))..........)))))))))..((......))......))))......)).))))))......)))))))))))).)))))))))))))).......((((.....)))).................)))))))..))..)))....)))))).....)))).))))))).))))).).)).)))))...))))))))))))).))))))))))))))).))))))))))...........))).)))))))))))
.(((((((((.((.(((((((((((((.(((((((((((((((.(((((((((((((..........(((((((.((((((.(((((((.((((.....((((((..((((((((((((......((((((((((.((((..(((((...(((((((((...........(((((..(((.((.(((((......((((((((...((((((.(((..........)))))))))...))).)))))......))))).))..)))...)))))..........))))))))).))))).......................((((((((((((.....((((((((..((((((((((.....)))))).(((((((((..((((..((((.((.....)).)))).))))........(((((....)))))..........)))))))))..((......))......))))......)).))))))......)))))))))))).)))))))))))))).......((((.....)))).................)))))))..))..)))....)))))).....)))).))))))).))))).).)).)))))...))))))))))))).))))))))))))))).))))))))))...........))).)))))))))))
Structure
u u a ----------- u U uuuuguuuac - c - g a uaaga --au -- -- -------------------------------aacaua c ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ca ccc cuauccuauau -au -a a uaauuu - cau g gguu aucaccauu gu cuu gaguugucuc caugucUAGACCAUU GUGAGAAGGGAgu accaa ua c cccca ucucuaa uuug aguauu gcu ca auuaagg gcuaguucga auac uacua uuuuuaaaa guuug gcu gc uagcg ugugu ucu ggugca cag a ||||||||| || ||| |||||||||| ||||||||||||||| ||||||||||||| ||||| || | ||||| ||||||| |||| |||||| ||| || ||||||| |||||||||| |||| ||||| ||||||||| ||||| ||| || ||||| ||||| ||| |||||| ||| uagugguaa ca gaa cucaguggag guguAGAUCUGGUAG UACUCUUCCcuua ugguu gu g ggggu agggguu aaau uuauaa cga gu ugguucc ugaucaagcu uaug gugau aaaaauuuu cgaac ugg ug gucgu auaua aga ccaugu guu g - - a auggagguacu c C -------uau u a a g a cuaug gaau ug ac acauuuacuaaaauauacuaaaacucuuagccgaacc - uuuauuuuuuucaauacauacguuguagaccuuuucaguacuuacuugaauuagcugaaugaagauauggauugaagacuuccuagucugaaaguaucccauugauuaauugauuuugucauuuggguuucuucguuccugucgagauuaucgacacugacacucgauguccaucuggaaagaauaacuuacccccaaaccccuugucua --u -caaaaaccgu ccu ga c ucucuu u ucu - auuu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr4: 12625094-12625782 [+]
Database links
Mature ath-miR824-5p
| Accession | MIMAT0004277 |
| Description | Arabidopsis thaliana ath-miR824-5p mature miRNA |
| Sequence | 35 - UAGACCAUUUGUGAGAAGGGA - 55 |
| Evidence |
experimental
454 [1-2], Northern [1,3], cloned [2], Illumina [4] |
Mature ath-miR824-3p
| Accession | MIMAT0032024 |
| Description | Arabidopsis thaliana ath-miR824-3p mature miRNA |
| Sequence | 628 - CCUUCUCAUCGAUGGUCUAGA - 648 |
| Evidence | not_experimental |
References
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