Stem-loop ath-MIR869

Accession

MI0005447

Description

Arabidopsis thaliana ath-MIR869 precursor miRNA MIR869

Gene
family

RF04143; MIR869

Literature search

1 open access papers mention ath-MIR869
(1 sentences)

Sequence

42735 reads, 193.0 reads per million, 185 experiments

gcccaccauacagauuuccauacgguagaagaaaguauCACCUAUCUCAACUCCAGGAUuggaccaguacuaggcucaucauaguuaagccacaauccacgauuccucaucagcuauaaaagcaaaaccuucauaucuauccuuguuucuaaaccagucucauagauaugaaggcuuuguuucugaugaaggauugugggauuguugcuuaacacugaugagcauauuauugguucaauUCUGGUGUUGAGAUAGUUGACacuucuuauaccguaugaaaacauguguggugggc
((((((((((((..(((.(((((((((.(((((.((.(((.((((((((((.(((((((((((((((((.((.((((((((..(((((((.((((((((((((((.(((((((......(((((((.(((((((((((((.((.(((....))).))....))))))))))))).)))))))))))))).))))))).))))))).)))))))..)))))))).)).))))))))))))))))).)))))))))).))).))))))).))))))))).)))..))))))))))))

Structure

            ga   c         g     a  a   C          U                 c  g        ua       c       -       c       cuauaa       a             ---c  u   u 
gcccaccauaca  uuu cauacggua aagaa gu uCA CUAUCUCAAC CCAGGAUuggaccagua ua gcucauca  guuaagc acaaucc acgauuc ucaucag      aagcaaa ccuucauaucuau    cu guu c
||||||||||||  ||| ||||||||| ||||| || ||| |||||||||| ||||||||||||||||| || ||||||||  ||||||| ||||||| ||||||| |||||||      ||||||| |||||||||||||    || |||  
cggguggugugu  aaa guaugccau uucuu ca AGU GAUAGAGUUG GGUCUuaacuugguuau au cgaguagu  caauucg uguuagg uguuagg aguaguc      uuuguuu ggaaguauagaua    ga caa u
            ac   a         a     -  C   U          U                 u  a        ca       u       g       a       ------       c             cucu  c   a 

Annotation confidence High

Genome context

chr5: 15891579-15891873 [-]

Mature ath-miR869-5p

• Accession: MIMAT0060814
• Description: Arabidopsis thaliana ath-miR869-5p mature miRNA
• Sequence: 39 - CACCUAUCUCAACUCCAGGAU - 59
• Evidence: experimental ; Illumina [1]

Mature ath-miR869-3p

• Accession: MIMAT0004321
• Description: Arabidopsis thaliana ath-miR869-3p mature miRNA
• Sequence: 240 - UCUGGUGUUGAGAUAGUUGAC - 260
• Evidence: experimental ; 454 [1], cloned [1], Illumina [2]

References

1. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219