Stem-loop ath-MIR447b

Accession

MI0002408

Description

Arabidopsis thaliana ath-MIR447b precursor miRNA MIR447

Gene
family

RF04149; MIR447

Literature search

3 open access papers mention ath-MIR447b
(17 sentences)

Sequence

1055784 reads, 4339.0 reads per million, 185 experiments

cauucuuaauauacaauacuacuuuuucauccauuaauccccuuacaaugucgaguaaACGAAGCAUCUGUCCCCUGGuauugucuucgagcuugguguguuuuucuagccagccccaaguucucgaguugaucauuguuuguauucugacacauuauUUGGGGACGAGAUGUUUUGUUGacucgauauaagaaggggcuuuauggaagaaauuguaguauuauauauugagaaug
(((((((((((((.((((((((..((((.(((((.((.((((((...(((((((((.((((((((((((((((((.((((.(((.(((((((((((.(((((.....)))..)).)))))..)))))).........(((........)))))).)))).)))))).)))))))))))).)))))))))...)))))).)).))))).))))..)))))))).)))))))))))))

Structure

             c        uu    a     u  u      aca         a            -      U    u   ----------------------c      --     u  --   u 
cauucuuaauaua aauacuac  uuuc uccau aa ccccuu   augucgagu aACGAAGCAUCU GUCCCC GGua ugu                       uucgag  cuugg gu  guu u
||||||||||||| ||||||||  |||| ||||| || ||||||   ||||||||| |||||||||||| |||||| |||| |||                       ||||||  ||||| ||  ||| u
guaagaguuauau uuaugaug  aaag aggua uu ggggaa   uauagcuca UUGUUUUGUAGA CAGGGG Uuau aca                       gagcuc  gaacc cg  cga c
             a        uu    a     u  c      gaa         G            G      U    u   cagucuuauguuuguuacuaguu      uu     c  ac   u 

Annotation confidence High

Genome context

chr4: 1535426-1535661 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR447b

Mature ath-miR447b-5p

• Accession: MIMAT0053850
• Description: Arabidopsis thaliana ath-miR447b-5p mature miRNA
• Sequence: 59 - ACGAAGCAUCUGUCCCCUGG - 78
• Evidence: experimental ; Illumina [4]

Mature ath-miR447b-3p

• Accession: MIMAT0002114
• Description: Arabidopsis thaliana ath-miR447b-3p mature miRNA
• Sequence: 159 - UUGGGGACGAGAUGUUUUGUUG - 180
• Evidence: experimental ; cloned [1-2], 5'RACE [2], 454 [3], Illumina [4]

References

1. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


2. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


3. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


4. PubMed ID: 15851028
   microRNA-directed phasing during trans-acting siRNA biogenesis in plants
   "Allen E, Xie Z, Gustafson AM, Carrington JC"
   "Cell (2005) 121:207-221