Accession
MI0000189
Description
Arabidopsis thaliana
ath-MIR159a precursor miRNA
Literature search
60 open access papers mention ath-MIR159a
(498 sentences)
(498 sentences)
Sequence
79721002
reads,
196674.0
reads per million, 185 experiments
guaGAGCUCCUUAAAGUUCAAACAugaguugagcaggguaaagaaaAGCUGCUAAGCUAUGGAUCCCauaagcccuaauccuuguaaaguaaaaaaggauuugguuauauggAUUGCAUAUCUCAGGAGCUUUaacuugcccuuuaauggcuuuuacucuucUUUGGAUUGAAGGGAGCUCUAc
((((((((((((..((((((((...((((.(((((((((((...((((((.((.((.((((.(..(((((((((..(((((((...........))))))).)))).)))))..).)))).)).)).))))))...)))))))......))))..))))...))))))))..))))))))))))
((((((((((((..((((((((...((((.(((((((((((...((((((.((.((.((((.(..(((((((((..(((((((...........))))))).)))).)))))..).)))).)).)).))))))...)))))))......))))..))))...))))))))..))))))))))))
Structure
AA CAu -u ------ aga G A C G UC - cu guaa
guaGAGCUCCUU AGUUCAAA gagu gagc aggguaa aaAGCU CU AG UAUG A CCaua agcc aauccuu a
|||||||||||| |||||||| |||| |||| ||||||| |||||| || || |||| | ||||| |||| ||||||| g
cAUCUCGAGGGA UUAGGUUU cuca uucg ucccguu UUUCGA GA UC AUAC U gguau uugg uuaggaa u
AG cuu uu guaauu caa G C U G UA a -u aaaa
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR159a was identified independently by Reinhart et al. [1] and Mette et al. [2]. The latter group referred to this sequence by the internal identifier MIR40a. This sequence is not related to C. elegans miR-40. MIR159a is thought to target mRNAs coding for MYB proteins which are known to bind to the promoter of the floral meristem identity gene LEAFY [3].
Genome context
chr1: 27713233-27713416 [-]
Database links
Mature ath-miR159a-5p.1
| Accession | MIMAT0053794 |
| Description | Arabidopsis thaliana ath-miR159a-5p.1 mature miRNA |
| Sequence | 4 - GAGCUCCUUAAAGUUCAAACA - 24 |
| Evidence |
experimental
unknown |
Mature ath-miR159a-5p.2
| Accession | MIMAT0060845 |
| Description | Arabidopsis thaliana ath-miR159a-5p.2 mature miRNA |
| Sequence | 47 - AGCUGCUAAGCUAUGGAUCCC - 67 |
| Evidence |
experimental
Illumina [1] |
Mature ath-miR159a-3p.1
| Accession | MIMAT0000177 |
| Description | Arabidopsis thaliana ath-miR159a-3p.1 mature miRNA |
| Sequence | 163 - UUUGGAUUGAAGGGAGCUCUA - 183 |
| Evidence |
experimental
cloned [1,4], Northern [1], 5'RACE [4], 454 [5-6], MPSS [5], Illumina [7] |
Mature ath-miR159a-3p.2
| Accession | MIMAT0060844 |
| Description | Arabidopsis thaliana ath-miR159a-3p.2 mature miRNA |
| Sequence | 113 - AUUGCAUAUCUCAGGAGCUUU - 133 |
| Evidence |
experimental
Illumina [1] |
References
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