Accession
MI0001012
Description
Arabidopsis thaliana
ath-MIR395f precursor miRNA
Literature search
25 open access papers mention ath-MIR395f
(105 sentences)
(105 sentences)
Sequence
95163
reads,
609.0
reads per million, 178 experiments
auguccccuugaGUUCCCUUAAACGCUUCAUUGuucauacuuuguuaucaucuaucgaucgaucaaucaaucugaugaacACUGAAGUGUUUGGGGGGACUCUaggugacau
(((((.(((.((((((((((((((((((((.(((((((...(((((((((((....))).))).)).)))....))))))).)))))))))))))))))))).))).)))))
(((((.(((.((((((((((((((((((((.(((((((...(((((((((((....))).))).)).)))....))))))).)))))))))))))))))))).))).)))))
Structure
c u U -acu - - - u
auguc ccu gaGUUCCCUUAAACGCUUCA UGuucau uug uu auc auc a
||||| ||| |||||||||||||||||||| ||||||| ||| || ||| |||
uacag gga CUCAGGGGGGUUUGUGAAGU Acaagua aac aa uag uag u
u U C gucu u c c c
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].
Genome context
chr1: 26273858-26273969 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR395f
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR395f-5p
| Accession | MIMAT0053825 |
| Description | Arabidopsis thaliana ath-miR395f-5p mature miRNA |
| Sequence | 13 - GUUCCCUUAAACGCUUCAUUG - 33 |
| Evidence |
experimental
unknown |
Mature ath-miR395f-3p
| Accession | MIMAT0000943 |
| Description | Arabidopsis thaliana ath-miR395f-3p mature miRNA |
| Sequence | 81 - ACUGAAGUGUUUGGGGGGACUCU - 103 |
| Evidence |
experimental
5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4] |
References
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