Stem-loop ath-MIR861

Accession

MI0005438

Description

Arabidopsis thaliana ath-MIR861 precursor miRNA

Literature search

3 open access papers mention ath-MIR861
(3 sentences)

Sequence

11812 reads, 73.0 reads per million, 183 experiments

guaucauuguuuucgaacgAUGUCCUUGGAGAAAUAUGCGUcaauggaguccgucuucuugagaagcauuuuugagugagaaugauucucauGAUGGAUAUGUCUUCAAGGACuucuuucaaacaaugguac
((((((((((((..(((.((.(((((((((((.((((.(((((..((((((..((((((((((((...)))))))).))))..))))))..))))).)))).))))))))))).)).)))))))))))))))

Structure

            uc   c  U           A    G     au      cg    -        g 
guaucauuguuu  gaa gA GUCCUUGGAGA AUAU CGUca  ggaguc  ucuu cuugagaa  
||||||||||||  ||| || ||||||||||| |||| |||||  ||||||  |||| |||||||| c
caugguaacaaa  cuu cu CAGGAACUUCU UAUA GUAGu  ucuuag  agag gaguuuuu  
            --   u  u           G    G     ac      ua    u        a 

Annotation confidence Medium

Genome context

chr3: 17838135-17838266 [-]

Mature ath-miR861-5p

• Accession: MIMAT0004305
• Description: Arabidopsis thaliana ath-miR861-5p mature miRNA
• Sequence: 20 - AUGUCCUUGGAGAAAUAUGCGU - 41
• Evidence: experimental ; 454 [1], cloned [1], Illumina [2]

Mature ath-miR861-3p

• Accession: MIMAT0004306
• Description: Arabidopsis thaliana ath-miR861-3p mature miRNA
• Sequence: 93 - GAUGGAUAUGUCUUCAAGGAC - 113
• Evidence: experimental ; 454 [1], cloned [1]

References

1. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219