Stem-loop ath-MIR857

Accession

MI0005434

Description

Arabidopsis thaliana ath-MIR857 precursor miRNA

Literature search

8 open access papers mention ath-MIR857
(34 sentences)

Sequence

19547 reads, 56.0 reads per million, 144 experiments

uucgacuccuacaacAAACUUUCACCAUACAAAAUAaugaagaaaacacccaaaaagguuugaaugugugagguuagucucauuuuuaaaauagugacuuguuuuuuuuaaaauguuuuuuaagaauguuuuuucagcuuuuuauuuuauuuuaaaccuaaagguagcgugacuauuguggagaaauaaagaaacauaagaaaaaauauuuuugguuuauaguaagauguuguuuuaaaauauauauuuaaaaacaaugucacuauuuuaaacggaauauagacauuuucuauuaaugagauuaacgucgagcauuugaauuucuagauuuuuuucuaaguuaUUUUGUAUGUUGAAGGUGUAUuguaggaaucgga
(((((.((((((((...(((((((.(((((((((((((..((((((.........((((((((((((.(((.(((((((((((((((((((((((((((((((((((((((((....))))))))(((((((..((((.....((((((((.((((((.(((((((.........(((((..............))))).......))))))))))))).))))))))))))....))))))).......))))))).))))))))))))))......(((((.....))))).)))))))))))).))).))))))))))))........))))))..))))))))))))).)))))))...)))))))).)))))

Structure

     c        cAA       C             ga      cacccaaaa            g   g            ----------------------              -       uuuuaaaauguuuuuuaaga       --uu    uuuuu        u      u       gcgugacua     gagaaa 
uucga uccuacaa   ACUUUCA CAUACAAAAUAau  agaaaa         agguuugaaugu uga guuagucucauu                      uuuaaaauagugac uuguuuu                    auguuuu    cagc     auuuuauu uaaacc aaaggua         uugug      u
||||| ||||||||   ||||||| |||||||||||||  ||||||         |||||||||||| ||| ||||||||||||                      |||||||||||||| |||||||                    |||||||    ||||     |||||||| |||||| |||||||         |||||       
aggcu aggauguU   UGGAAGU GUAUGUUUUauug  ucuuuu         uuuaaguuuacg gcu caauuagaguaa                      aaauuuuaucacug aacaaaa                    uauaaaa    guug     uagaauga auuugg uuuuuau         aauac      a
     a        AUG       U             aa      -uuuagauc            a   g            uuaucuuuuacagauauaaggc              u       -------------auuuaua       uuuu    -----        u      -       --aaaaaag     aaagaa 

Annotation confidence High

Genome context

chr4: 7878185-7878561 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ath-MIR857

Mature ath-miR857-5p

• Accession: MIMAT0053884
• Description: Arabidopsis thaliana ath-miR857-5p mature miRNA
• Sequence: 16 - AAACUUUCACCAUACAAAAUA - 36
• Evidence: experimental ; unknown

Mature ath-miR857-3p

• Accession: MIMAT0004301
• Description: Arabidopsis thaliana ath-miR857-3p mature miRNA
• Sequence: 344 - UUUUGUAUGUUGAAGGUGUAU - 364
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219