Stem-loop ath-MIR845b

Accession

MI0005444

Description

Arabidopsis thaliana ath-MIR845b precursor miRNA MIR845_1

Gene
family

RF00901; MIR845_1

Literature search

2 open access papers mention ath-MIR845b
(4 sentences)

Sequence

461331 reads, 2405.0 reads per million, 142 experiments

agucgguuuccaucacgUCAAUUGCUAUCAGAGCAACGcaugauguauaauaacuaagcgUCGCUCUGAUACCAAAUUGAUGcaauggaaacaucgauu
.((((((((((((..(((((((((.(((((((((.((((..................)))).))))))))).).))))))))..))))))))..)))).

Structure

a    --        ca        - C         A    augaugua 
 gucg  guuuccau  cgUCAAUU G UAUCAGAGC ACGc        u
 ||||  ||||||||  |||||||| | ||||||||| ||||         
 uagc  caaaggua  GUAGUUAA C AUAGUCUCG Ugcg        a
u    ua        ac        A C         C    aaucaaua 

Annotation confidence High

Genome context

chr4: 12214069-12214167 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR845b

Mature ath-miR845b-5p

• Accession: MIMAT0053887
• Description: Arabidopsis thaliana ath-miR845b-5p mature miRNA
• Sequence: 18 - UCAAUUGCUAUCAGAGCAACG - 38
• Evidence: experimental ; unknown

Mature ath-miR845b-3p

• Accession: MIMAT0004317
• Description: Arabidopsis thaliana ath-miR845b-3p mature miRNA
• Sequence: 61 - UCGCUCUGAUACCAAAUUGAUG - 82
• Evidence: experimental ; 454 [1], cloned [1]

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219