Stem-loop ath-MIR778

Accession

MI0005108

Description

Arabidopsis thaliana ath-MIR778 precursor miRNA

Literature search

6 open access papers mention ath-MIR778
(14 sentences)

Sequence

11163 reads, 74.0 reads per million, 134 experiments

ccgccuUGGCUUGGUUUAUGUACACCGaguauguucagcuccauccuauacagauuuugggacaugugccuaggguugagguuucauauauagaaagaacugaACAAACUCGGUGUACAUAGACcaaaccaaggcggu
(((((((((.((((((((((((((((((((.((((((((((.((((((..((.((........)).))..)))))).))).((((.......))))...))))))).)))))))))))))))))))).))))))))).

Structure

-         C                    a       -------------------   c      ua  g  uuu 
 ccgccuUGG UUGGUUUAUGUACACCGagu uguucag                   cuc auccua  ca au   g
 ||||||||| |||||||||||||||||||| |||||||                   ||| ||||||  || ||    
 ggcggaacc aacCAGAUACAUGUGGCUCA ACAaguc                   gag ugggau  gu ua   g
u         a                    A       aagaaagauauauacuuug   u      cc  g  cag 

Annotation confidence Medium

Genome context

chr2: 17349437-17349574 [-]

Mature ath-miR778-5p

• Accession: MIMAT0003937
• Description: Arabidopsis thaliana ath-miR778-5p mature miRNA
• Sequence: 7 - UGGCUUGGUUUAUGUACACCG - 27
• Evidence: experimental ; MPSS [1], Northern [1], 454 [2]

Mature ath-miR778-3p

• Accession: MIMAT0053857
• Description: Arabidopsis thaliana ath-miR778-3p mature miRNA
• Sequence: 104 - ACAAACUCGGUGUACAUAGAC - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219