Stem-loop ath-MIR781a

Accession

MI0005111

Description

Arabidopsis thaliana ath-MIR781a precursor miRNA MIR781

Gene
family

RF03583; MIR781

Literature search

3 open access papers mention ath-MIR781a
(6 sentences)

Sequence

46588 reads, 152.0 reads per million, 183 experiments

ucaaaUUAGAGUUUUCUGGAUACUUAuuaguuacuaacaaagagagggcuucuucgauauuaacuuuuaAGUAUCCAGAAAACUCUAAAUUuga
((((((((((((((((((((((((((..(((((.((.(.(((((.....))))).).)).)))))..))))))))))))))))))).)))))))

Structure

       -                   uu     c  a a     a 
ucaaaUU AGAGUUUUCUGGAUACUUA  aguua ua c aagag g
||||||| |||||||||||||||||||  ||||| || | ||||| g
aguUUAA UCUCAAAAGACCUAUGAau  ucaau au g uucuu g
       A                   uu     u  a c     c 

Annotation confidence High

Genome context

chr1: 7423518-7423611 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR781a

Mature ath-miR781a-5p

• Accession: MIMAT0003940
• Description: Arabidopsis thaliana ath-miR781a-5p mature miRNA
• Sequence: 6 - UUAGAGUUUUCUGGAUACUUA - 26
• Evidence: experimental ; MPSS [1], Northern [1], 454 [2]

Mature ath-miR781a-3p

• Accession: MIMAT0053858
• Description: Arabidopsis thaliana ath-miR781a-3p mature miRNA
• Sequence: 70 - AGUAUCCAGAAAACUCUAAAUU - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219