Stem-loop ath-MIR773a

Accession

MI0005103

Description

Arabidopsis thaliana ath-MIR773a precursor miRNA

Literature search

5 open access papers mention ath-MIR773a
(11 sentences)

Sequence

432973 reads, 1846.0 reads per million, 182 experiments

aggAGGCAAUAGCUUGAGCAAAUAAuugauugcagaaguccaucgacuaaagcugucaccugUUUGCUUCCAGCUUUUGUCUCcu
(((((((((.((((.(((((((((..((((.((...((((....))))...)).))))..)))))))))..)))).)))))))))

Structure

         U    -U         Au    u  aga    c 
aggAGGCAA AGCU  GAGCAAAUA  ugau gc   aguc a
||||||||| ||||  |||||||||  |||| ||   ||||  
ucCUCUGUU UCGA  UUCGUUUgu  acug cg   ucag u
         U    CC         cc    u  aaa    c 

Annotation confidence High

Genome context

chr1: 13067251-13067335 [+]

Mature ath-miR773a-5p

• Accession: MIMAT0053852
• Description: Arabidopsis thaliana ath-miR773a-5p mature miRNA
• Sequence: 4 - AGGCAAUAGCUUGAGCAAAUAA - 25
• Evidence: experimental ; unknown

Mature ath-miR773a-3p

• Accession: MIMAT0003932
• Description: Arabidopsis thaliana ath-miR773a-3p mature miRNA
• Sequence: 63 - UUUGCUUCCAGCUUUUGUCUC - 83
• Evidence: experimental ; MPSS [1], Northern [1], 454 [2], cloned [2]

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219