Stem-loop ath-MIR859

Accession

MI0005436

Description

Arabidopsis thaliana ath-MIR859 precursor miRNA MIR859

Gene
family

RF03762; MIR859

Literature search

4 open access papers mention ath-MIR859
(6 sentences)

Sequence

38799 reads, 247.0 reads per million, 171 experiments

aaagguagaugucgaaaUCUCUCUGUUGUGAAGUCAAAcaugaguaugaauuaacauuaauggaucuuuuugauucauaauacucauguuuggUUUCACAGUAGAUAGAUAUCGacgucuaucuuu
(((((((((((((((.((((.((((((((((((((((((((((((((............(((((((.....))))))).)))))))))))))))))))))))))).)))).)))))))))))))))

Structure

               a    C                          gaauuaacauua       u 
aaagguagaugucga aUCU UCUGUUGUGAAGUCAAAcaugaguau            auggauc u
||||||||||||||| |||| ||||||||||||||||||||||||||            ||||||| u
uuucuaucugcaGCU UAGA AGAUGACACUUUgguuuguacucaua            uacuuag u
               A    U                          -----------a       u 

Annotation confidence Medium

Genome context

chr1: 22149718-22149843 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR859

Mature ath-miR859-5p

• Accession: MIMAT0004303
• Description: Arabidopsis thaliana ath-miR859-5p mature miRNA
• Sequence: 18 - UCUCUCUGUUGUGAAGUCAAA - 38
• Evidence: experimental ; 454 [1], cloned [1]

Mature ath-miR859-3p

• Accession: MIMAT0053885
• Description: Arabidopsis thaliana ath-miR859-3p mature miRNA
• Sequence: 94 - UUUCACAGUAGAUAGAUAUCG - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219