Stem-loop ath-MIR867

Accession

MI0005445

Description

Arabidopsis thaliana ath-MIR867 precursor miRNA

Literature search

1 open access papers mention ath-MIR867
(2 sentences)

Sequence

58201 reads, 677.0 reads per million, 82 experiments

acacauaaaacuaguauauugccUUGAACAUGGUUUAUUAGGAAagacaugagaacauaucugaacauaguuUUUCCUUAUAUACAAUGUUCAAAGUaaugaauuaguuuuauuuugu
....(((((((((((.((((((.((((((((.((.(((.(((((((((((((((.....)))...))).))))))))).))).)).)))))))).)))))).))))))))))).....

Structure

-acac           a      c        G  U   U         -   ---   a 
     auaaaacuagu uauugc UUGAACAU GU UAU AGGAAagac aug   aga c
     ||||||||||| |||||| |||||||| || ||| ||||||||| |||   ||| a
     uauuuugauua guaaUG AACUUGUA CA AUA UCCUUUuug uac   ucu u
uguuu           a      A        A  U   U         a   aag   a 

Annotation confidence High

Genome context

chr4: 11375364-11375481 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR867

Mature ath-miR867-5p

• Accession: MIMAT0004318
• Description: Arabidopsis thaliana ath-miR867-5p mature miRNA
• Sequence: 24 - UUGAACAUGGUUUAUUAGGAA - 44
• Evidence: experimental ; cloned [1]

Mature ath-miR867-3p

• Accession: MIMAT0053888
• Description: Arabidopsis thaliana ath-miR867-3p mature miRNA
• Sequence: 73 - UUUCCUUAUAUACAAUGUUCAAAGU - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219