Stem-loop ath-MIR862

Accession

MI0005439

Description

Arabidopsis thaliana ath-MIR862 precursor miRNA MIR862

Gene
family

RF04187; MIR862

Literature search

1 open access papers mention ath-MIR862
(2 sentences)

Sequence

acaguaguuuUCCAAUAGGUCGAGCAUGUGCugaaacuguguguacagaguucucauaaacacacaguuucagcAUAUGCUGGAUCUACUUGAAGacuacugu
((((((((((((...((((((.((((((((((((((((((((((...((....))....)))))))))))))))))))))).))))))...))))))))))))

Structure

            CAA      G                      -aca  g 
acaguaguuuUC   UAGGUC AGCAUGUGCugaaacugugugu    ga u
||||||||||||   |||||| ||||||||||||||||||||||    ||  
ugucaucaGAAG   AUCUAG UCGUAUAcgacuuugacacaca    cu u
            UUC      G                      aaua  c 

Annotation confidence Not enough data

Genome context

chr2: 10718096-10718198 [+]

Mature ath-miR862-5p

• Accession: MIMAT0004307
• Description: Arabidopsis thaliana ath-miR862-5p mature miRNA
• Sequence: 11 - UCCAAUAGGUCGAGCAUGUGC - 31
• Evidence: experimental ; cloned [1], Illumina [2]

Mature ath-miR862-3p

• Accession: MIMAT0004308
• Description: Arabidopsis thaliana ath-miR862-3p mature miRNA
• Sequence: 75 - AUAUGCUGGAUCUACUUGAAG - 95
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219