Stem-loop ath-MIR775

Accession

MI0005105

Description

Arabidopsis thaliana ath-MIR775 precursor miRNA

Literature search

8 open access papers mention ath-MIR775
(40 sentences)

Sequence

203845 reads, 821.0 reads per million, 183 experiments

uuuaaacguuGCACUACGUGACAUUGAAACUgucuuucaacauuccaauauuucaacuuucgaauacccaauauuugguuuguucaaagacauuUUCGAUGUCUAGCAGUGCCAauguuuaaa
.((((((((((((((.(..((((((((((.(((((((.((((..((((..........................))))..)))).))))))).))))))))))..).)))).)))))))))).

Structure

u          -    A GU          C       c    uu    uauuucaacuuu 
 uuaaacguuG CACU C  GACAUUGAAA Ugucuuu aaca  ccaa            c
 |||||||||| |||| |  |||||||||| ||||||| ||||  ||||             
 aauuuguaAC GUGA G  CUGUAGCUUu acagaaa uugu  gguu            g
a          C    C AU          u       c    uu    uauaacccauaa 

Annotation confidence High

Genome context

chr1: 29422452-29422574 [+]

Mature ath-miR775-5p

• Accession: MIMAT0053854
• Description: Arabidopsis thaliana ath-miR775-5p mature miRNA
• Sequence: 11 - GCACUACGUGACAUUGAAACU - 31
• Evidence: experimental ; unknown

Mature ath-miR775-3p

• Accession: MIMAT0003934
• Description: Arabidopsis thaliana ath-miR775-3p mature miRNA
• Sequence: 95 - UUCGAUGUCUAGCAGUGCCA - 114
• Evidence: experimental ; MPSS [1], Northern [1,3], 454 [2-3], cloned [2], Illumina [4]

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


3. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


4. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219