Accession
MI0005401
Description
Arabidopsis thaliana
ath-MIR845a precursor miRNA MIR845_1
Gene
family?
family?
RF00901;
MIR845_1
Literature search
3 open access papers mention ath-MIR845a
(5 sentences)
(5 sentences)
Sequence
1632952
reads,
6617.0
reads per million, 167 experiments
agauaagggauugcacgauuucucaauaguuccgucgcugcguuuccaucacgUCGAUUGCUGUCAGAGCCACgccuaugaagaauuugugCGGCUCUGAUACCAAUUGAUGcuauggaaacaucgauauugccugauuccguguuuccuuuuaccuuguugu
....((((((..(((((.....(((...((...((((....((((((((..(((((((((.((((((((((.(((..((.....))..))).)))))))))).)))))))))..))))))))..))))...)).)))...))))).))))))...........
....((((((..(((((.....(((...((...((((....((((((((..(((((((((.((((((((((.(((..((.....))..))).)))))))))).)))))))))..))))))))..))))...)).)))...))))).))))))...........
Structure
-------agau uu auuuc aua ucc cugc ca C A cu g
aaggga gcacg uca gu gucg guuuccau cgUCGAUUG UGUCAGAGCC Cgc au a
|||||| ||||| ||| || |||| |||||||| ||||||||| |||||||||| ||| || a
uuuccu ugugc agu cg uagc caaaggua GUAGUUAAC AUAGUCUCGG gug ua g
uguuguuccau -u --cuu --c uua --ua uc C C uu a
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr4: 12217406-12217568 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR845a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR845a-5p
| Accession | MIMAT0053871 |
| Description | Arabidopsis thaliana ath-miR845a-5p mature miRNA |
| Sequence | 54 - UCGAUUGCUGUCAGAGCCAC - 73 |
| Evidence |
experimental
unknown |
Mature ath-miR845a-3p
| Accession | MIMAT0004268 |
| Description | Arabidopsis thaliana ath-miR845a-3p mature miRNA |
| Sequence | 92 - CGGCUCUGAUACCAAUUGAUG - 112 |
| Evidence |
experimental
454 [1-2], cloned [2] |
References
|
