Stem-loop ath-MIR845a

Accession

MI0005401

Description

Arabidopsis thaliana ath-MIR845a precursor miRNA MIR845_1

Gene
family

RF00901; MIR845_1

Literature search

3 open access papers mention ath-MIR845a
(5 sentences)

Sequence

agauaagggauugcacgauuucucaauaguuccgucgcugcguuuccaucacgucgauugcugucagagccacgccuaugaagaauuugugCGGCUCUGAUACCAAUUGAUGcuauggaaacaucgauauugccugauuccguguuuccuuuuaccuuguugu
....((((((..(((((.....(((...((...((((....((((((((..(((((((((.((((((((((.(((..((.....))..))).)))))))))).)))))))))..))))))))..))))...)).)))...))))).))))))...........

Structure

-------agau      uu     auuuc   aua  ucc    cugc        ca         c          a   cu  g 
           aaggga  gcacg     uca   gu   gucg    guuuccau  cgucgauug ugucagagcc cgc  au a
           ||||||  |||||     |||   ||   ||||    ||||||||  ||||||||| |||||||||| |||  || a
           uuuccu  ugugc     agu   cg   uagc    caaaggua  GUAGUUAAC AUAGUCUCGG gug  ua g
uguuguuccau      -u     --cuu   --c  uua    --ua        uc         C          C   uu  a 

Annotation confidence Not enough data

Genome context

chr4: 12217406-12217568 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR845a

Mature ath-miR845a

• Accession: MIMAT0004268
• Description: Arabidopsis thaliana ath-miR845a mature miRNA
• Sequence: 92 - CGGCUCUGAUACCAAUUGAUG - 112
• Evidence: experimental ; 454 [1-2], cloned [2]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219