Stem-loop ath-MIR777

Accession

MI0005107

Description

Arabidopsis thaliana ath-MIR777 precursor miRNA

Sequence

24830 reads, 138.0 reads per million, 168 experiments

agagAGCAACAAAAUCAGUGUGUAUUUGuuaagacaaauguuuauauaagucguccaugcguuguacauuuaaucuuaacuaaUACGCAUUGAGUUUCGUUGCUUucu
(((((((((((((.((((((((((((.(((((((.((((((....((((..(((....)))))))))))))..))))))).)))))))))))).))).))))))))))

Structure

          -   A            U       -c      uuau    gu   c 
agagAGCAAC AAA UCAGUGUGUAUU Guuaaga  aaaugu    auaa  cgu c
|||||||||| ||| |||||||||||| |||||||  ||||||    ||||  |||  
ucuUUCGUUG UUU AGUUACGCAUaa caauucu  uuuaca    uguu  gcg a
          C   G            u       aa      ----    --   u 

Annotation confidence High

Genome context

chr1: 26638000-26638107 [+]

Mature ath-miR777-5p

• Accession: MIMAT0053856
• Description: Arabidopsis thaliana ath-miR777-5p mature miRNA
• Sequence: 5 - AGCAACAAAAUCAGUGUGUAUUUG - 28
• Evidence: experimental ; unknown

Mature ath-miR777-3p

• Accession: MIMAT0003936
• Description: Arabidopsis thaliana ath-miR777-3p mature miRNA
• Sequence: 84 - UACGCAUUGAGUUUCGUUGCUU - 105
• Evidence: experimental ; MPSS [1], Northern [1], 454 [2-3], cloned [2]

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


3. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219