Stem-loop ath-MIR771

Accession

MI0005101

Description

Arabidopsis thaliana ath-MIR771 precursor miRNA

Sequence

32150 reads, 183.0 reads per million, 132 experiments

uaaauucgucaUGAGCCUCUGUGGUAGCCCUCAcaaugaucucaauagagugcaugccacgaucuuguaaagacguagaugAGGGCUCCUCAGGUGUUCAUGucgaauguuag
...(((((.(((((((.((((.((.((((((((..(((..(((....)))..)))...(((.((((...)))))))...)))))))))).)))).))))))).))))).....

Structure

--uaa     u       C    U  U        caaugaucucaauagagugcaugcc   a    g 
     auucg caUGAGC UCUG GG AGCCCUCA                         acg ucuu  
     ||||| ||||||| |||| || ||||||||                         ||| |||| u
     uaagc GUACUUG GGAC CC UCGGGAgu                         ugc agaa  
gauug     u       U    U  -        ----------------------aga   -    a 

Annotation confidence Medium

Genome context

chr3: 19659301-19659413 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR771

Mature ath-miR771-5p

• Accession: MIMAT0003930
• Description: Arabidopsis thaliana ath-miR771-5p mature miRNA
• Sequence: 12 - UGAGCCUCUGUGGUAGCCCUCA - 33
• Evidence: experimental ; MPSS [1], Northern [1,3], 454 [2-3], cloned [2]

Mature ath-miR771-3p

• Accession: MIMAT0053851
• Description: Arabidopsis thaliana ath-miR771-3p mature miRNA
• Sequence: 82 - AGGGCUCCUCAGGUGUUCAUG - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


3. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219