Stem-loop ath-MIR852

Accession

MI0005407

Description

Arabidopsis thaliana ath-MIR852 precursor miRNA

Literature search

3 open access papers mention ath-MIR852
(6 sentences)

Sequence

9120 reads, 94.0 reads per million, 181 experiments

uuuauccuaaacauccuauuaaguuuuuaugcugaaacaaagcucaaagcucAGAGCUAAGGCGCUUAUCUUCUuugauauugcauggaguaugcuucuacuucucuaggagaugcguuuuauggaaauaucaaagAAGAUAAGCGCCUUAGUUCUGAAgauaagcgccuuauucacaaaaugcauaagguuguauucuuuguuaggu
.....(((((.((........((((((...(((.......)))..))))))(((((((((((((((((((((((((((((((.((((((((((.((((((......))))))))))..))))))..)))))))))))))))))))))))))))))))((((..(..(((((((.((.....)).)))))))..)..))))))))))).

Structure

uuuau     a  -----uccuauuaaguuuuuaugcugaaacaaagcucaaagcu                               -g      --    g      cu 
     ccuaa ca                                           cAGAGCUAAGGCGCUUAUCUUCUuugauauu  caugga  guau cuucua  u
     ||||| ||                                           |||||||||||||||||||||||||||||||  ||||||  |||| ||||||   
     ggauu gu                                           GUCUUGAUUCCGCGAAUAGAAgaaacuauaa  guauuu  cgua gaggau  c
----u     -  uucuuauguuggaauacguaaaacacuuauuccgcgaauagAA                               ag      ug    -      cu 

Annotation confidence High

Genome context

chr4: 8336166-8336373 [+]

Mature ath-miR852-5p

• Accession: MIMAT0053875
• Description: Arabidopsis thaliana ath-miR852-5p mature miRNA
• Sequence: 53 - AGAGCUAAGGCGCUUAUCUUCU - 74
• Evidence: experimental ; unknown

Mature ath-miR852-3p

• Accession: MIMAT0004275
• Description: Arabidopsis thaliana ath-miR852-3p mature miRNA
• Sequence: 137 - AAGAUAAGCGCCUUAGUUCUGAA - 159
• Evidence: experimental ; 454 [1-2], cloned [2], Illumina [3]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219