Stem-loop ath-MIR319b

Accession

MI0000545

Description

Arabidopsis thaliana ath-MIR319b precursor miRNA

Literature search

40 open access papers mention ath-MIR319b
(290 sentences)

Sequence

9208187 reads, 30104.0 reads per million, 185 experiments

agAGAGCUUUCUUCGGUCCACUCauggaguaauaugugagauuuaauuGACUCUCGACUCAUUCAUCCAAauaccaaaugaaagaauuuguucucauaugguaaaugAAUGAAUGAUGCGAGAGACAAAuugagucuucacuucucuaugcUUGGACUGAAGGGAGCUCCCU
((.(((((((((((((((((..(((((((......(((((((((((((..((((((..((((((((.((..(((((.((((..(((....))))))).)))))..)).))))))))..))))))...))))))))).))))..)))))))..))))))))))))))))).))

Structure

  A                 CU       uaauau    -         -GA      AC        C  Aa     a    aa   u 
ag GAGCUUUCUUCGGUCCA  Cauggag      guga gauuuaauu   CUCUCG  UCAUUCAU CA  uacca auga  gaa u
|| |||||||||||||||||  |||||||      |||| |||||||||   ||||||  |||||||| ||  ||||| ||||  |||  
UC CUCGAGGGAAGUCAGGU  guaucuc      cacu cugaguuAA   GAGAGC  AGUAAGUA gu  auggu uacu  cuu u
  C                 Uc       ----uu    u         ACA      GU        A  aa     a    --   g 

Annotation confidence High

Comments

This sequence is a homologue of miR319a (MIR:MI0000544) -- also called miR-JAW -- and is located on BAC MBK23.

Genome context

chr5: 16660469-16660640 [-]

Mature ath-miR319b-5p.1

• Accession: MIMAT0053806
• Description: Arabidopsis thaliana ath-miR319b-5p.1 mature miRNA
• Sequence: 3 - AGAGCUUUCUUCGGUCCACUC - 23
• Evidence: experimental ; unknown

Mature ath-miR319b-5p.2

• Accession: MIMAT0060849
• Description: Arabidopsis thaliana ath-miR319b-5p.2 mature miRNA
• Sequence: 49 - GACUCUCGACUCAUUCAUCCAA - 70
• Evidence: experimental ; Illumina [1]

Mature ath-miR319b-3p.1

• Accession: MIMAT0000512
• Description: Arabidopsis thaliana ath-miR319b-3p.1 mature miRNA
• Sequence: 152 - UUGGACUGAAGGGAGCUCCCU - 172
• Evidence: experimental ; Northern [1], 5'RACE [2], cloned [2], 454 [3], Illumina [5]

Mature ath-miR319b-3p.2

• Accession: MIMAT0060848
• Description: Arabidopsis thaliana ath-miR319b-3p.2 mature miRNA
• Sequence: 108 - AAUGAAUGAUGCGAGAGACAAA - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


2. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


3. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


4. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


5. PubMed ID: 12931144
   Control of leaf morphogenesis by microRNAs
   "Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D"
   "Nature (2003) 425:257-263