Stem-loop ath-MIR856

Accession

MI0005433

Description

Arabidopsis thaliana ath-MIR856 precursor miRNA MIR856

Gene
family

RF04153; MIR856

Literature search

4 open access papers mention ath-MIR856
(13 sentences)

Sequence

14155 reads, 101.0 reads per million, 109 experiments

auguauaagaggugagacuguuggcuuUAAUCCUACCAAUAACUUCAGCugcaucaugaagaguagacagagauucuggcgguugaggguuucuucguagagguugaucgauucuuaauguccuguggauuuuaaguucccaaaacuguugcuuaggacauacaagaucguucaauguccaagaagaaaccugagccgcuacaaucaucggucuaaucucuuuagcagaUGAAGUUAUUUGUGGUAUAAAacccacaguuuuaucaugcau
((((((....(((((((((((.((.((((..((.((.((((((((((.((((....((((((((((((.((((((.((((((((..((((((((((...((.(((((.((((.(((.((((((((.(.(.....((((.....))))..).).))))))))..))))))).))))).))...)))))))))).)))))))).)))).)).)))))..))))))))))).)))))))))).))))..)))).)).)))))))))))))))))

Structure

      aaga           u  c    AU  U  C          G    auca       --     a  -    c        ga          gua  g     u    u   -a        u g uuuua    c 
auguau    ggugagacugu gg uuUA  CC AC AAUAACUUCA Cugc    ugaagag  uagac ga gauu uggcgguu  ggguuucuuc   ga guuga cgau cuu  auguccug g a     aguu c
||||||    ||||||||||| || ||||  || || |||||||||| ||||    |||||||  ||||| || |||| ||||||||  ||||||||||   || ||||| |||| |||  |||||||| | |     |||| c
uacgua    cuauuuugaca cc AAAU  GG UG UUAUUGAAGU gacg    auuucuc  aucug cu cuaa aucgccga  uccaaagaag   cu uaacu gcua gaa  uacaggau c u     ucaa a
      ----           c  a    AU  -  U          a    ----       ua     g  a    c        -g          aac  g     u    -   ca        u g ---ug    a 

Annotation confidence High

Genome context

chr1: 11957460-11957730 [+]

Mature ath-miR856-5p

• Accession: MIMAT0004300
• Description: Arabidopsis thaliana ath-miR856-5p mature miRNA
• Sequence: 28 - UAAUCCUACCAAUAACUUCAGC - 49
• Evidence: experimental ; 454 [1], cloned [1]

Mature ath-miR856-3p

• Accession: MIMAT0053883
• Description: Arabidopsis thaliana ath-miR856-3p mature miRNA
• Sequence: 230 - UGAAGUUAUUUGUGGUAUAAA - 250
• Evidence: experimental ; unknown

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219