Stem-loop ath-MIR865

Accession

MI0005442

Description

Arabidopsis thaliana ath-MIR865 precursor miRNA

Literature search

1 open access papers mention ath-MIR865
(1 sentences)

Sequence

85476 reads, 290.0 reads per million, 185 experiments

gaUCUGGGAUGAAUUUGGAUCUAAuugagcaaaaaauuguguuuuuucaaucuauugaauuucacauccuuaaacccuugcauauucaaucuauugaauuucgcauauuuUUCCUCAAAUUUAUCCAAAAUcaucccaaauc
(((.((((((((.(((((((..(.(((((.(((((..((((....((((((..(((((((....((............))...)))))))..))))))...))))..))))).))))).)..))))))).)))))))).)))

Structure

   C        A       CU A     c     au    uuuu      cu       uuca  uccuu 
gaU UGGGAUGA UUUGGAU  A uugag aaaaa  ugug    uucaau  auugaau    ca     a
||| |||||||| |||||||  | ||||| |||||  ||||    ||||||  |||||||    ||      
cua acccuacU AAACCUA  U AACUC UUuuu  acgc    aaguua  uaacuua    gu     a
   a        A       UU A     C     au    -uuu      uc       -uac  uccca 

Annotation confidence Medium

Genome context

chr5: 5169990-5170131 [+]

Mature ath-miR865-5p

• Accession: MIMAT0004313
• Description: Arabidopsis thaliana ath-miR865-5p mature miRNA
• Sequence: 3 - UCUGGGAUGAAUUUGGAUCUAA - 24
• Evidence: experimental ; cloned [1], Illumina [2]

Mature ath-miR865-3p

• Accession: MIMAT0004314
• Description: Arabidopsis thaliana ath-miR865-3p mature miRNA
• Sequence: 111 - UUCCUCAAAUUUAUCCAAAAU - 131
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219


2. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701