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Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots |
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|---|---|
| PubMed ID | 24119003 |
| Authors | Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA |
| Journal | BMC Genomics |
| Volume | 14 |
| Pages | 701 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| ath-MIR160a | MI0000190 | None | chr2 | 16340279 | 16340363 | + | High |
| ath-MIR160c | MI0000192 | None | chr5 | 19009094 | 19009182 | - | High |
| ath-MIR166a | MI0000201 | None | chr2 | 19176108 | 19176277 | + | High |
| ath-MIR166b | MI0000202 | None | chr3 | 22922206 | 22922325 | + | High |
| ath-MIR393b | MI0001004 | None | chr3 | 20691647 | 20691806 | + | High |
| ath-MIR396a | MI0001013 | None | chr2 | 4142323 | 4142473 | - | High |
| ath-MIR398a | MI0001017 | None | chr2 | 1040938 | 1041042 | + | High |
| ath-MIR408 | MI0001080 | None | chr2 | 19319814 | 19320031 | + | Medium |
| ath-MIR472 | MI0005102 | None | chr1 | 4182132 | 4182299 | - | - |
| ath-MIR829 | MI0005385 | None | chr1 | 11834022 | 11834226 | - | High |
| ath-MIR831 | MI0005387 | None | chr2 | 10247206 | 10247462 | + | High |
| ath-MIR840 | MI0005396 | None | chr2 | 771337 | 771562 | - | High |
| ath-MIR865 | MI0005442 | None | chr5 | 5169990 | 5170131 | + | Medium |
| ath-MIR870 | MI0005448 | None | chr5 | 21395545 | 21395629 | - | Low |
| ath-MIR5632 | MI0019204 | None | chr2 | 8392449 | 8392608 | - | Low |
| ath-MIR8165 | MI0026793 | None | chr3 | 16538489 | 16538625 | - | - |
| ath-MIR8166 | MI0026794 | None | chr1 | 4525271 | 4525360 | - | Low |
| ath-MIR8167a | MI0026795 | None | chr2 | 8894932 | 8895006 | + | Low |
| ath-MIR8167b | MI0026796 | None | chr3 | 17469946 | 17470020 | - | Low |
| ath-MIR8167c | MI0026797 | None | chr3 | 18843649 | 18843723 | - | Low |
| ath-MIR8168 | MI0026798 | None | chr2 | 5080634 | 5080714 | + | Low |
| ath-MIR8169 | MI0026799 | None | chr3 | 8836256 | 8836384 | + | Low |
| ath-MIR8170 | MI0026800 | None | chr2 | 14099959 | 14100149 | + | Medium |
| ath-MIR8171 | MI0026801 | None | chr2 | 16890446 | 16890567 | + | Low |
| ath-MIR8172 | MI0026802 | None | chr4 | 7102461 | 7102632 | - | Low |
| ath-MIR8173 | MI0026803 | None | chr5 | 7478569 | 7478673 | - | Low |
| ath-MIR8174 | MI0026804 | None | chr3 | 16589414 | 16589526 | - | Medium |
| ath-MIR8175 | MI0026805 | None | chr2 | 3740797 | 3740985 | + | Low |
| ath-MIR8176 | MI0026806 | None | chr4 | 11795177 | 11795275 | + | Medium |
| ath-MIR8177 | MI0026807 | None | chr5 | 9362559 | 9362655 | - | - |
| ath-MIR8178 | MI0026808 | None | chr4 | 18087205 | 18087442 | + | Low |
| ath-MIR8179 | MI0026809 | None | chr4 | 7161853 | 7161963 | - | Medium |
| ath-MIR8180 | MI0026810 | None | chr2 | 2063848 | 2064061 | + | Low |
| ath-MIR8181 | MI0026811 | None | chr5 | 21641177 | 21641308 | - | Low |
| ath-MIR8182 | MI0026812 | None | chr3 | 22678152 | 22678279 | + | - |
| ath-MIR8183 | MI0026813 | None | chr3 | 11747715 | 11747831 | - | Medium |
| ath-MIR8184 | MI0026814 | None | chr5 | 3311962 | 3312070 | - | High |
| ath-MIR8167d | MI0031739 | None | chr5 | 7057157 | 7057231 | + | Low |
| ath-MIR8167e | MI0031740 | None | chr5 | 23431703 | 23431777 | - | Low |
| ath-MIR8167f | MI0031741 | None | chr5 | 24002239 | 24002313 | - | Low |
| ath-MIR162a | MI0000194 | None | chr5 | 2634905 | 2635044 | - | High |
| ath-MIR167a | MI0000208 | None | chr3 | 8108072 | 8108209 | + | High |
| ath-MIR167b | MI0000209 | None | chr3 | 23406168 | 23406276 | + | High |
| ath-MIR167d | MI0000975 | None | chr1 | 11137539 | 11137915 | + | High |
| ath-MIR393a | MI0001003 | None | chr2 | 16652101 | 16652233 | + | High |
| ath-MIR167c | MI0001088 | None | chr3 | 1306622 | 1306781 | - | High |
| ath-MIR838 | MI0005394 | None | chr1 | 28500 | 28706 | + | High |
| ath-MIR5640 | MI0019213 | None | chr1 | 1653221 | 1653624 | - | Medium |