Stem-loop ath-MIR8169

Accession

MI0026799

Description

Arabidopsis thaliana ath-MIR8169 precursor miRNA

Sequence

3937 reads, 34.0 reads per million, 154 experiments

auaucuucuggagaacgaaaAUCUGGAGGUGAGAUCAUUGCUGAUuugaauuguaaauuuuuuaugaaaauuuugugguaaucaaaucuaauggcgaaaauucAUAGACAGAGUCACUCACAGAgauau
((((((.((((((...((...((((...(((((....((((((((((((((((.((((((((...))))))))..))))..)))))))....)))))...)))))...)))).)).))).)))))))))

Structure

      u   -   aac  aaA    GAG     AUCA     ----       --    -u        u 
auaucu cug gag   ga   UCUG   GUGAG    UUGCU    GAUuuga  auug  aaauuuuu  
|||||| ||| |||   ||   ||||   |||||    |||||    |||||||  ||||  |||||||| a
uauagA GAC CUC   CU   AGAC   UAcuu    agcgg    cuaaacu  uggu  uuuaaaag  
      -   A   --A  --G    AGA     -aaa     uaau       aa    gu        u 

Annotation confidence Low

Genome context

chr3: 8836256-8836384 [+]

Mature ath-miR8169-5p

• Accession: MIMAT0053985
• Description: Arabidopsis thaliana ath-miR8169-5p mature miRNA
• Sequence: 21 - AUCUGGAGGUGAGAUCAUUGCUGAU - 45
• Evidence: experimental ; unknown

Mature ath-miR8169-3p

• Accession: MIMAT0032767
• Description: Arabidopsis thaliana ath-miR8169-3p mature miRNA
• Sequence: 104 - AUAGACAGAGUCACUCACAGA - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701