miRBase entry: ath-MIR8175

Stem-loop ath-MIR8175


Accession
MI0026805
Description
Arabidopsis thaliana ath-MIR8175 precursor miRNA


Sequence

cuuaaggcaauuugaccuauaucaaauuuggcaccguugccggggaucgacccgggucacccgcgugacaggcgggaauacuuaccacuuaguacaacgacccaauauagugguaaguauucucgcaugucacucggguucGAUCCCCGGCAACGGCGCCAaauuugauauagcucaaaucgccuuaag
((((((((.((((((.((((((((((((((((.(((((((((((((((((........(((((.((((((.((((((((((((((((((...................)))))))))))))))))).)))))).)))))))))))))))))))))).)))))))))))))))).)))))).))))))))

Structure
        a      c                a                 cccggguc     c      g                  uaguacaa 
cuuaaggc auuuga cuauaucaaauuuggc ccguugccggggaucga        acccg gugaca gcgggaauacuuaccacu        c
|||||||| |||||| |||||||||||||||| |||||||||||||||||        ||||| |||||| ||||||||||||||||||        g
gaauuccg uaaacu gauauaguuuaaACCG GGCAACGGCCCCUAGcu        ugggc cacugu cgcucuuaugaaugguga        a
        c      c                C                 --------     u      a                  uauaaccc 


Annotation confidence Not enough data
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Genome context
chr2: 3740797-3740985 [+]

Database links

Mature ath-miR8175

Accession MIMAT0032774
Description Arabidopsis thaliana ath-miR8175 mature miRNA
Sequence 142 - GAUCCCCGGCAACGGCGCCA - 161
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701