Stem-loop ath-MIR8175

Accession

MI0026805

Description

Arabidopsis thaliana ath-MIR8175 precursor miRNA

Sequence

154515 reads, 1962.0 reads per million, 182 experiments

cuuaaggcaauuugaccuauaucaaauuuggcaccguugccggggaucgacccgggucACCCGCGUGACAGGCGGGAAUACUUaccacuuaguacaacgacccaauauagugguaaguauucucgcaugucacucggguucGAUCCCCGGCAACGGCGCCAaauuugauauagcucaaaucgccuuaag
((((((((.((((((.((((((((((((((((.(((((((((((((((((........(((((.((((((.((((((((((((((((((...................)))))))))))))))))).)))))).)))))))))))))))))))))).)))))))))))))))).)))))).))))))))

Structure

        a      c                a                 cccggguc     C      G                  uaguacaa 
cuuaaggc auuuga cuauaucaaauuuggc ccguugccggggaucga        ACCCG GUGACA GCGGGAAUACUUaccacu        c
|||||||| |||||| |||||||||||||||| |||||||||||||||||        ||||| |||||| ||||||||||||||||||        g
gaauuccg uaaacu gauauaguuuaaACCG GGCAACGGCCCCUAGcu        ugggc cacugu cgcucuuaugaaugguga        a
        c      c                C                 --------     u      a                  uauaaccc 

Annotation confidence Low

Genome context

chr2: 3740797-3740985 [+]

Mature ath-miR8175-5p

• Accession: MIMAT0053990
• Description: Arabidopsis thaliana ath-miR8175-5p mature miRNA
• Sequence: 59 - ACCCGCGUGACAGGCGGGAAUACUU - 83
• Evidence: experimental ; unknown

Mature ath-miR8175-3p

• Accession: MIMAT0032774
• Description: Arabidopsis thaliana ath-miR8175-3p mature miRNA
• Sequence: 142 - GAUCCCCGGCAACGGCGCCA - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701