Stem-loop ath-MIR8176

Accession

MI0026806

Description

Arabidopsis thaliana ath-MIR8176 precursor miRNA

Literature search

1 open access papers mention ath-MIR8176
(1 sentences)

Sequence

13048 reads, 182.0 reads per million, 181 experiments

uagauugaauaagaagcuaucuGGCCGGUGGUCGCGAGAGGGAuuuagaucUCUCCGGUCGAUUCAUCUGCUUACCgaguuucuuacauuuucuuuuug
.(((.....(((((((((....(((.(((((((((..(((((((....)))))))..).))).))))).))).....))))))))).....))).....

Structure

----u   uugaa         -aucu   C     -   - GA       u 
     aga     uaagaagcu     GGC GGUGG UCG C  GAGGGAu u
     |||     |||||||||     ||| ||||| ||| |  |||||||  
     ucu     auucuuuga     UCG CUACU AGC G  CUCUcua a
guuuu   uuuac         gCCAU   U     U   U GC       g 

Annotation confidence Medium

Genome context

chr4: 11795177-11795275 [+]

Mature ath-miR8176-5p

• Accession: MIMAT0032775
• Description: Arabidopsis thaliana ath-miR8176-5p mature miRNA
• Sequence: 23 - GGCCGGUGGUCGCGAGAGGGA - 43
• Evidence: experimental ; Illumina [1]

Mature ath-miR8176-3p

• Accession: MIMAT0053991
• Description: Arabidopsis thaliana ath-miR8176-3p mature miRNA
• Sequence: 52 - UCUCCGGUCGAUUCAUCUGCUUACC - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701