Accession
MI0000194
Description
Arabidopsis thaliana
ath-MIR162a precursor miRNA
Literature search
17 open access papers mention ath-MIR162a
(49 sentences)
(49 sentences)
Sequence
uaguuggaagaagagugagagucgcUGGAGGCAGCGGUUCAUCGAUCucuuccugugaacacauuaaaaauguaaaagcaugaauagaUCGAUAAACCUCUGCAUCCAGcguuugccucuuguaucuuucuuauugacuu
.(((((((((((((.((((((.(((((((.((((.((((.((((((((.(((.(((....(((((...)))))....))).))).)))))))).)))).)))).))))))).....))))))..)).))))).)))))).
.(((((((((((((.((((((.(((((((.((((.((((.((((((((.(((.(((....(((((...)))))....))).))).)))))))).)))).)))).))))))).....))))))..)).))))).)))))).
Structure
u - - -g ----u G C C c c gaac a aguugg aagaa ga ugagag cgcUGGA GCAG GGUU AUCGAUCu uuc ugu acauu |||||| ||||| || |||||| ||||||| |||| |||| |||||||| ||| ||| ||||| a ucaguu uucuu cu guucuc gcGACCU CGUC CCAA UAGCUaga aag acg uguaa u a u au cguuu A U A u u aaaa a
Annotation confidence
Not enough data
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Genome context
chr5: 2634905-2635044 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR162a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR162a-3p
| Accession | MIMAT0000182 |
| Description | Arabidopsis thaliana ath-miR162a-3p mature miRNA |
| Sequence | 89 - UCGAUAAACCUCUGCAUCCAG - 109 |
| Evidence |
experimental
cloned [1,3], Northern [1], 3'RACE [3], 5'RACE [3], 454 [4-5], MPSS [4] |
Mature ath-miR162a-5p
| Accession | MIMAT0031876 |
| Description | Arabidopsis thaliana ath-miR162a-5p mature miRNA |
| Sequence | 26 - UGGAGGCAGCGGUUCAUCGAUC - 47 |
| Evidence | not_experimental |
References
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