miRBase entry: ath-MIR8174

Stem-loop ath-MIR8174


Accession
MI0026804
Description
Arabidopsis thaliana ath-MIR8174 precursor miRNA


Sequence

27425 reads, 256.0 reads per million, 180 experiments
cggcccauccGUUGUCUUUCCUGGUACGcaugugccauggcuuucucguaagggacuggauuguccguauuucucAUGUGUAUAGGGAAGCUAAUCgucuuguagauggguug
((((((((((((((.((((((((.((((((((.(..(((((..(((.((.....)).)))..).))))....).)))))))))))))))).))).)).......)))))))))

Structure
         -------  -   U        G        u --cc    - uu   c  a 
cggcccauc       cG UUG CUUUCCUG UACGcaug g    augg c  ucu gu a
|||||||||       || ||| |||||||| |||||||| |    |||| |  ||| || g
guuggguag       gC AAU GAAGGGAU AUGUGUAc c    ugcc g  agg ca g
         auguucu  U   C        -        u uuua    u uu   u  g 


Annotation confidence Medium
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Genome context
chr3: 16589414-16589526 [-]

Database links

Mature ath-miR8174-5p

Accession MIMAT0053989
Description Arabidopsis thaliana ath-miR8174-5p mature miRNA
Sequence 11 - GUUGUCUUUCCUGGUACG - 28
Evidence experimental
unknown

Mature ath-miR8174-3p

Accession MIMAT0032773
Description Arabidopsis thaliana ath-miR8174-3p mature miRNA
Sequence 76 - AUGUGUAUAGGGAAGCUAAUC - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701