Stem-loop ath-MIR8166

Accession

MI0026794

Description

Arabidopsis thaliana ath-MIR8166 precursor miRNA

Sequence

71689 reads, 517.0 reads per million, 184 experiments

aauaaaaauaaugaaaaugaaggAGAGAGUGUAGAAAGUUUCUCAcuugagauacuuuuuACAACCCAUCAUGACAAUUuucauuuuauu
.........(((((((((....((..(..((((((((((.((((....)))).))))))))))..)..))......))))))))).....

Structure

aauaaaaau         --gaag  GA AG          U    A 
         aaugaaaau      gA  G  UGUAGAAAGU UCUC c
         |||||||||      ||  |  |||||||||| ||||  
         uuacuuUUA      CU  C  ACAuuuuuca agag u
----uuauu         ACAGUA  AC CA          u    u 

Annotation confidence Low

Genome context

chr1: 4525271-4525360 [-]

Mature ath-miR8166-5p

• Accession: MIMAT0032762
• Description: Arabidopsis thaliana ath-miR8166-5p mature miRNA
• Sequence: 24 - AGAGAGUGUAGAAAGUUUCUCA - 45
• Evidence: experimental ; Illumina [1]

Mature ath-miR8166-3p

• Accession: MIMAT0053980
• Description: Arabidopsis thaliana ath-miR8166-3p mature miRNA
• Sequence: 61 - ACAACCCAUCAUGACAAUU - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701