Stem-loop ath-MIR167c

Accession

MI0001088

Description

Arabidopsis thaliana ath-MIR167c precursor miRNA

Literature search

45 open access papers mention ath-MIR167c
(236 sentences)

Sequence

ccaguagcaguUAAGCUGCCAGCAUGAUCUUGucuuccucucuuagguuucauauauaguuaauaaauauuuuauauauuucuuguucuuacaagauuauaugaucauagcuuagagagagagagagacUAGGUCAUGCUGGUAGUUUCACCugcuaaug
.((.((((((..((((((((((((((((((.(((((((((((((((((((((((((.........(((((.....)))))((((((....)))))).)))))))....))))).))))))).)).)))).))))))))))))))))))...)))))).))

Structure

c  g      -uU                  U    -  -       -     ----       uaguuaauaaauauuuuauauauu      u 
 ca uagcag   AAGCUGCCAGCAUGAUCU Gucu uc cucucuu agguu    ucauaua                        ucuugu c
 || ||||||   |||||||||||||||||| |||| || ||||||| |||||    |||||||                        ||||||  
 gu aucguC   UUUGAUGGUCGUACUGGA caga ag gagagag uucga    aguauau                        agaaca u
-  a      CAC                  U    g  a       a     uacu       -----------------------u      u 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR167 family [1], subsequently verified in [2]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

chr3: 1306622-1306781 [-]

Mature ath-miR167c-5p

• Accession: MIMAT0001018
• Description: Arabidopsis thaliana ath-miR167c-5p mature miRNA
• Sequence: 12 - UAAGCUGCCAGCAUGAUCUUG - 32
• Evidence: experimental ; 454 [2], Illumina [3]

Mature ath-miR167c-3p

• Accession: MIMAT0031917
• Description: Arabidopsis thaliana ath-miR167c-3p mature miRNA
• Sequence: 130 - UAGGUCAUGCUGGUAGUUUCACC - 152
• Evidence: not_experimental

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799