Stem-loop ath-MIR8168

Accession

MI0026798

Description

Arabidopsis thaliana ath-MIR8168 precursor miRNA

Sequence

8252 reads, 68.0 reads per million, 167 experiments

cgguuuauguuguauaccaUACUUCCUUAUUACCUUGUUCAGGcccgauucuugggAGGUGCUGAGUGUGCUAGUGCaccg
((((.(((...((((((((((((((((.(((.(((.....)))...)))....)))))))).)).))))))..))).))))

Structure

    u   guu      -  -        ---U   --A   U 
cggu uau   guauac ca UACUUCCU    AUU   CCU G
|||| |||   |||||| || ||||||||    |||   ||| U
gcca GUG   CGUGUG GU GUGGAggg    uag   GGA U
    C   -AU      A  C        uucu   ccc   C 

Annotation confidence Low

Genome context

chr2: 5080634-5080714 [+]

Mature ath-miR8168-5p

• Accession: MIMAT0053984
• Description: Arabidopsis thaliana ath-miR8168-5p mature miRNA
• Sequence: 20 - UACUUCCUUAUUACCUUGUUCAGG - 43
• Evidence: experimental ; unknown

Mature ath-miR8168-3p

• Accession: MIMAT0032766
• Description: Arabidopsis thaliana ath-miR8168-3p mature miRNA
• Sequence: 57 - AGGUGCUGAGUGUGCUAGUGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701