Accession
MI0019213
Description
Arabidopsis thaliana
ath-MIR5640 precursor miRNA
Literature search
2 open access papers mention ath-MIR5640
(25 sentences)
(25 sentences)
Sequence
18028
reads,
93.0
reads per million, 182 experiments
aaggugaggaacaugaacaccaguuacauuauaaacuuuccuguguuacaaacuuauauauuugaUGAGAGAAGGAAUUAGAUUCAugaaaauauuaaucauuuuaagguuaguaguacuuauuggcuguucuugcaaaaccaaugguaaaguaugugaugaaaccauuagaacuuuuugauucaagcaucugaguguucuaucagaggguuagagccaaucuaaguuaagaacuauauuuggggucucaucacauuaccauugguuucaaaagaacagugagaaguccuauucaccguauacagauuggucuuuucaggaAUCUAACUCACUCUCUGAUCAAcuaucuagccuugaaauacaggcauguuuuucuguaccugguguucauguuggucucaccc
..(((((((((((((((((((((.((((....((((...((((((((.(((..(((.(((.(((((.(((((..((.((((((((.((((((.(((((((.......(((.(((((.((((.((.(((((((((...((((((((((((....(((((((((.(((.....(((((((((((...(((((....)))))..)))))))))))....((((....((((...))))....))))))).)))))))))))))))))))))...))))))))).)))))).))))).))).......))))))).)))))).)))))))).))..))))).))))).))).)))..))).))))))))...))))...)))).))))))))))))))..))))))).
..(((((((((((((((((((((.((((....((((...((((((((.(((..(((.(((.(((((.(((((..((.((((((((.((((((.(((((((.......(((.(((((.((((.((.(((((((((...((((((((((((....(((((((((.(((.....(((((((((((...(((((....)))))..)))))))))))....((((....((((...))))....))))))).)))))))))))))))))))))...))))))))).)))))).))))).))).......))))))).)))))).)))))))).))..))))).))))).))).)))..))).))))))))...))))...)))).))))))))))))))..))))))).
Structure
aa -- u uuau uuu a ac u u G AG A A u auuuuaa u u a g gca aagu a --------------------------auuag uca c ggugagg aacaugaacaccag uaca aaac ccuguguu caa uua aua uugaU AGAGA GA UUAGAUUC ugaaaa auuaauc ggu aguag acuu uu gcuguucuu aaaccaauggua augugauga acc aacuuuuugau agcau u ||||||| |||||||||||||| |||| |||| |||||||| ||| ||| ||| ||||| ||||| || |||||||| |||||| ||||||| ||| ||||| |||| || ||||||||| |||||||||||| ||||||||| ||| ||||||||||| ||||| ccacucu uuguacuugugguc augu uuug ggacauaa guu gau uau AACUA UCUCU CU AAUCUAag acuuuu ugguuag cca uuauc ugaa ga ugacaagaa uuugguuaccau uacacuacu ugg uugggagacua uugug g -c gg c -cuu uac a cc c c G CA C g c acauaug c c - g aac ---- c gguuuauaucaagaauugaaucuaaccgaga -uc a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chr1: 1653221-1653624 [-]
Database links
Mature ath-miR5640-5p
| Accession | MIMAT0022401 |
| Description | Arabidopsis thaliana ath-miR5640-5p mature miRNA |
| Sequence | 66 - UGAGAGAAGGAAUUAGAUUCA - 86 |
| Evidence |
experimental
Illumina [1] |
Mature ath-miR5640-3p
| Accession | MIMAT0053930 |
| Description | Arabidopsis thaliana ath-miR5640-3p mature miRNA |
| Sequence | 322 - AUCUAACUCACUCUCUGAUCAA - 343 |
| Evidence |
experimental
unknown |
References
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