Stem-loop ath-MIR8179

Accession

MI0026809

Description

Arabidopsis thaliana ath-MIR8179 precursor miRNA

Sequence

14846 reads, 64.0 reads per million, 163 experiments

caccgaaucauauUGACUGCAUUAACUUGAUCGUugguuguuaagauggauauuugucuuaacaaccaacgAUCAAGUUAAUGCAGCCAAUCUGAucuucuuauuaaggug
((((..((((.((((.(((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))).)))).))))...........))))

Structure

    ---------ga    u    A                                 a 
cacc           auca auUG CUGCAUUAACUUGAUCGUugguuguuaagaugg u
||||           |||| |||| |||||||||||||||||||||||||||||||||  
gugg           uAGU UAAC GACGUAAUUGAACUAgcaaccaacaauucuguu a
    aauuauucuuc    C    C                                 u 

Annotation confidence Medium

Genome context

chr4: 7161853-7161963 [-]

Mature ath-miR8179-5p

• Accession: MIMAT0032778
• Description: Arabidopsis thaliana ath-miR8179-5p mature miRNA
• Sequence: 14 - UGACUGCAUUAACUUGAUCGU - 34
• Evidence: experimental ; Illumina [1]

Mature ath-miR8179-3p

• Accession: MIMAT0053993
• Description: Arabidopsis thaliana ath-miR8179-3p mature miRNA
• Sequence: 72 - AUCAAGUUAAUGCAGCCAAUCUGA - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701