miRBase entry: ath-MIR8181

Stem-loop ath-MIR8181


Accession
MI0026811
Description
Arabidopsis thaliana ath-MIR8181 precursor miRNA


Sequence

218 reads, 3.0 reads per million, 94 experiments
UGGGGGUGGGGGGGUGACAGagacauucuucauucguaugcucaugaugacgucagcacggguucaugguuugugggucuugauguuAAGCAUGUAGAUGAAGGAAaguuuugcuguucugcgugguccuca
(((((((.(.(.((.(((((((((.(((((((((..((((((.....((((((((....((((((((.....))))))))))))))))))))))..)))))))))..))))..))))))).).).)))))))

Structure
       G G G  U     --    -a         cg      cauga        gcac        g 
UGGGGGU G G GG GACAG  agac  uucuucauu  uaugcu     ugacguca    ggguucau g
||||||| | | || |||||  ||||  |||||||||  ||||||     ||||||||    |||||||| u
acuccug u c uc uuguc  uuug  AGGAAGUAG  GUACGA     Auuguagu    ucugggug u
       g g g  -     gu    aA         AU      -----        ----        u 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr5: 21641177-21641308 [-]

Database links

Mature ath-miR8181-5p

Accession MIMAT0032780
Description Arabidopsis thaliana ath-miR8181-5p mature miRNA
Sequence 1 - UGGGGGUGGGGGGGUGACAG - 20
Evidence experimental
Illumina [1]

Mature ath-miR8181-3p

Accession MIMAT0053995
Description Arabidopsis thaliana ath-miR8181-3p mature miRNA
Sequence 88 - AAGCAUGUAGAUGAAGGAA - 106
Evidence experimental
unknown

References

  1. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701