Stem-loop ath-MIR8171

Accession

MI0026801

Description

Arabidopsis thaliana ath-MIR8171 precursor miRNA

Sequence

42255 reads, 205.0 reads per million, 171 experiments

gcggaaucaugaaaccacuuAUAGGUGGGCCAGUGGUAGGAaggauuucgggcugagggugaaauucccaauaaucccggguucgaauccccACGGCUGCAAACACCUUAAGUGGCcaccgc
((((.....((...(((((((.(((((...((((.((.((..(((((.((((((..((((.............))))..))))))))))))))).))))....)))))))))))).))))))

Structure

    aauca  aaa       U     -GGC    G  A  Aa     u      ga    gaaau 
gcgg     ug   ccacuuA AGGUG    CAGU GU GG  ggauu cgggcu  gggu     u
||||     ||   ||||||| |||||    |||| || ||  ||||| ||||||  ||||     c
cgcc     ac   GGUGAAU UCCAC    GUCG CA cc  ccuaa gcuugg  ccua     c
    -----  --C       -     AAAC    G  -  --     -      gc    auaac 

Annotation confidence Low

Genome context

chr2: 16890446-16890567 [+]

Mature ath-miR8171-5p

• Accession: MIMAT0032770
• Description: Arabidopsis thaliana ath-miR8171-5p mature miRNA
• Sequence: 21 - AUAGGUGGGCCAGUGGUAGGA - 41
• Evidence: experimental ; Illumina [1]

Mature ath-miR8171-3p

• Accession: MIMAT0053986
• Description: Arabidopsis thaliana ath-miR8171-3p mature miRNA
• Sequence: 93 - ACGGCUGCAAACACCUUAAGUGGC - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701