Accession
MI0005394
Description
Arabidopsis thaliana
ath-MIR838 precursor miRNA
Literature search
4 open access papers mention ath-MIR838
(13 sentences)
(13 sentences)
Sequence
7672
reads,
35.0
reads per million, 165 experiments
uacuuuucuaauaucacgaggacuuacauggccucaagucaccugugguguugUGCAAGAAGGAGAAGCAAAGUcugucuauguauuaugagauagcuacuucuauggcuaggauauauguuguacaagaccggcUUUUCUUCUACUUCUUGCACAaccugagguuauugaggcuauacaagucuucuucuauaauguuauuuauua
.................((((((((..((((((((((...((((..((.(((((((((((((.(((((.((((((.((((.(((((((((...((((((......))))))...))))....))))))))).)))))).))))).))))))))))))))).))))..))))))))))..))))))))....................
.................((((((((..((((((((((...((((..((.(((((((((((((.(((((.((((((.((((.(((((((((...((((((......))))))...))))....))))))))).)))))).))))).))))))))))))))).))))..))))))))))..))))))))....................
Structure
---uacuuuucuaauaucac ac guc gu u G C u a ---- aga cu
gaggacuu auggccucaa accu gg guugUGCAAGAAG AGAAG AAAGUc gucu uguau uaug uagcua u
|||||||| |||||||||| |||| || ||||||||||||| ||||| |||||| |||| ||||| |||| ||||||
cuucugaa uaucggaguu ugga uc caACACGUUCUUC UCUUC UUUcgg caga acaug auau aucggu c
auuauuuauuguaauaucuu ca -au -g - A U c - uugu agg au
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr1: 28500-28706 [+]
Database links
Mature ath-miR838-5p
| Accession | MIMAT0053867 |
| Description | Arabidopsis thaliana ath-miR838-5p mature miRNA |
| Sequence | 54 - UGCAAGAAGGAGAAGCAAAGU - 74 |
| Evidence |
experimental
unknown |
Mature ath-miR838-3p
| Accession | MIMAT0004260 |
| Description | Arabidopsis thaliana ath-miR838-3p mature miRNA |
| Sequence | 136 - UUUUCUUCUACUUCUUGCACA - 156 |
| Evidence |
experimental
454 [1], Illumina [2] |
References
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