Stem-loop ath-MIR8167c

Accession

MI0026797

Description

Arabidopsis thaliana ath-MIR8167c precursor miRNA

Sequence

387855 reads, 1578.0 reads per million, 184 experiments

caucuuugagauuuuacACAGUAGUCAUGGAGUUUUUGGAAgagagaaaguggAGAUGUGGAGAUCGUGGGGAUG
((((((((.((((((.((((....((((....(((((.....)))))..))))...)))))))))).))))))))

Structure

        a      a    GUAG    GGAG     G 
caucuuug gauuuu cACA    UCAU    UUUUU G
|||||||| |||||| ||||    ||||    ||||| A
GUAGGGGU CUAGAG GUGU    ggug    agaga A
        G      -    -AGA    --aa     g 

Annotation confidence Low

Genome context

chr3: 18843649-18843723 [-]

Mature ath-miR8167c-5p

• Accession: MIMAT0053983
• Description: Arabidopsis thaliana ath-miR8167c-5p mature miRNA
• Sequence: 18 - ACAGUAGUCAUGGAGUUUUUGGAA - 41
• Evidence: experimental ; unknown

Mature ath-miR8167c-3p

• Accession: MIMAT0032765
• Description: Arabidopsis thaliana ath-miR8167c-3p mature miRNA
• Sequence: 54 - AGAUGUGGAGAUCGUGGGGAUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701