Stem-loop ath-MIR8173

Accession

MI0026803

Description

Arabidopsis thaliana ath-MIR8173 precursor miRNA

Sequence

28573 reads, 157.0 reads per million, 171 experiments

uucuuuuaccucaaucagcaucacuaaucuucauaguuguuaccAACGAGCUGUUGGCCCAAUGGUAAaucuccuagguagAUGUGCUGAUUCGAGGUGGGAggg
.((((((((((((((((((((.....((((...(((...((((((..(.(((...))).)..)))))).....)))...))))))))))))).))))))))))).

Structure

u           -         cacua    uca   --uug      AC A   G 
 ucuuuuaccuc aaucagcau     aucu   uag     uuaccA  G GCU  
 ||||||||||| |||||||||     ||||   |||     ||||||  | ||| U
 ggAGGGUGGAG UUAGUCGUG     UAga   auc     AAUGGU  C CGG  
g           C         -----    ugg   cucua      AA C   U 

Annotation confidence Low

Genome context

chr5: 7478569-7478673 [-]

Mature ath-miR8173-5p

• Accession: MIMAT0053988
• Description: Arabidopsis thaliana ath-miR8173-5p mature miRNA
• Sequence: 45 - AACGAGCUGUUGGCCCAAUGGUAA - 68
• Evidence: experimental ; unknown

Mature ath-miR8173-3p

• Accession: MIMAT0032772
• Description: Arabidopsis thaliana ath-miR8173-3p mature miRNA
• Sequence: 82 - AUGUGCUGAUUCGAGGUGGGA - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701