Stem-loop ath-MIR8170

Accession

MI0026800

Description

Arabidopsis thaliana ath-MIR8170 precursor miRNA

Sequence

6021 reads, 34.0 reads per million, 157 experiments

cagcuuaaaagaugaugugagugacagacaugaugacaagccuuuggucaacccuuucuccAUAGCAAAUCGAUAAGCAAUGcaaugaaagaagcuuaaacaauggaucuucucaugccauugcuUAAAGAUUUUCUAUGUGGAaaggaugccuaccaacuuuucagacuauuuuucucacaucuuuacug
.............((((((((............(((.(((...(((((....(((((((.(((((.(((((..(((((((((..((((((((..(.........)..)))).))))..)))))))))..))))).))))).)))))))......)))))))).)))..........)))))))).......

Structure

cagcuuaaaagau        ugacagacauga   c   ccu     --caac       c     C     GA         ca    -    ag uua 
             gaugugag            uga aag   uuggu      ccuuucu cAUAG AAAUC  UAAGCAAUG  auga aaga  c   a
             ||||||||            ||| |||   |||||      ||||||| ||||| |||||  |||||||||  |||| ||||  |   a
             cuacacuc            acu uuc   aacca      ggaaAGG GUAUC UUUAG  AUucguuac  uacu uucu  g   c
------gucauuu        --uuuuuaucag   u   ---     uccgua       U     U     AA         cg    c    ag uaa 

Annotation confidence Medium

Genome context

chr2: 14099959-14100149 [+]

Mature ath-miR8170-5p

• Accession: MIMAT0032768
• Description: Arabidopsis thaliana ath-miR8170-5p mature miRNA
• Sequence: 62 - AUAGCAAAUCGAUAAGCAAUG - 82
• Evidence: experimental ; Illumina [1]

Mature ath-miR8170-3p

• Accession: MIMAT0032769
• Description: Arabidopsis thaliana ath-miR8170-3p mature miRNA
• Sequence: 126 - UAAAGAUUUUCUAUGUGGA - 144
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701