Stem-loop ath-MIR8183

Accession

MI0026813

Description

Arabidopsis thaliana ath-MIR8183 precursor miRNA

Sequence

109031 reads, 477.0 reads per million, 175 experiments

agaaguuaggguUUUAGUUGACGGAAUUGUGGCgggaucuacaauucuucuucuucuucuucugaaaagaaacccaaagaUCCCUCCAUAAUUCCCUCCACUAAaacccuaacuucu
((((((((((((((((((.((.((((((((((.(((((((.......(((((.(((.......))))))))......))))))).)))))))))).)).))))))))))))))))))

Structure

                  U  C          C       acaauuc     c   uu 
agaaguuaggguUUUAGU GA GGAAUUGUGG gggaucu       uucuu uuc  c
|||||||||||||||||| || |||||||||| |||||||       ||||| |||  u
ucuucaaucccaaAAUCA CU CCUUAAUACC CCCUaga       aagaa aag  u
                  C  C          U       -aaccca     -   uc 

Annotation confidence Medium

Genome context

chr3: 11747715-11747831 [-]

Mature ath-miR8183-5p

• Accession: MIMAT0032782
• Description: Arabidopsis thaliana ath-miR8183-5p mature miRNA
• Sequence: 13 - UUUAGUUGACGGAAUUGUGGC - 33
• Evidence: experimental ; Illumina [1]

Mature ath-miR8183-3p

• Accession: MIMAT0053996
• Description: Arabidopsis thaliana ath-miR8183-3p mature miRNA
• Sequence: 81 - UCCCUCCAUAAUUCCCUCCACUAA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701